Pairwise Alignments

Query, 312 a.a., Flagellar motor protein from Pseudomonas stutzeri RCH2

Subject, 351 a.a., Flagellar motor rotation protein MotB from Sphingobium sp. HT1-2

 Score =  119 bits (299), Expect = 8e-32
 Identities = 85/284 (29%), Positives = 123/284 (43%), Gaps = 11/284 (3%)

Query: 1   MKSRGKSGNEHE---IIVRRRTKKGHGDEHGGAWKVAFADFTLAMMALFMVLWIIQPQMN 57
           M  + +  NE E   IIV++   +GHG  HGGAWKVA+ADF  AMMA F+++W++     
Sbjct: 1   MAEKKRGANEPEPRPIIVKKIIVEGHGGHHGGAWKVAYADFVTAMMAFFLLMWLLGATTE 60

Query: 58  LTNPAFGDEESNPLVD------GGAGIFDGTSTSPLELDGVPVRQARNEDEPERRRVESD 111
               A  D  +  LV+      G  G+F G S    E       Q        R    + 
Sbjct: 61  KQRKALADYFTPTLVELKMNSAGSTGMFGGDSLMAKENYPTTGGQGNLAITIPRDATGTK 120

Query: 112 RAEGELPEDGSRRYASTAELQALAALMQEVAGQVDALANLEVDVVPQGLRILIKDDQQRF 171
              G+      R+     + Q    + ++  G      N+      +GLRI + D+    
Sbjct: 121 DQGGKALRAADRQKFENIKKQLEDRMSKK--GLARLRKNVRFTETREGLRIDLIDEADFA 178

Query: 172 MFQRGSAVLNPHFARLLGVLAGVLAKVENKLIISGHTDATPYRLQSGYDNWNLSGDRALR 231
           MF+ G+  L P    L+  +A  LA + N LI+ GHTD  PY      +NW LS  RA  
Sbjct: 179 MFRSGTDQLLPEAKALIAEVADALATMPNPLIVRGHTDGLPYASGRSMNNWMLSSARAES 238

Query: 232 ARNVLVSAGLPGRSVLQVTAQADVMPLRPDAPEDGANRRVEILL 275
            R  L   G+P     ++   AD  P       D  NRR+ ++L
Sbjct: 239 TRKALAETGIPNARFARIEGVADREPFVKSDAYDPRNRRMSVIL 282