Pairwise Alignments

Query, 413 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

Subject, 406 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  504 bits (1298), Expect = e-147
 Identities = 267/403 (66%), Positives = 319/403 (79%), Gaps = 1/403 (0%)

Query: 10  ARVEAVYRSESRRVLATLIRLLGDFDRAEEALHDAFAAALQQWPRDGVPDNPRAWLVSTG 69
           A VEAVYR ESRR+LATLIRLLGDFD AEEA+HDAF  A+++W RDG+P NPRAWLVS G
Sbjct: 3   AEVEAVYRQESRRILATLIRLLGDFDLAEEAMHDAFFIAVERWQRDGIPANPRAWLVSVG 62

Query: 70  RFKAIDALRRRARFDASLRLLAEQLE-DAAEAAEVDEMEDDRLRLIFTCCHPALPADGRV 128
           RFKAIDALRRR RFD S   L+  LE  A + +E + + DDRLRLIFTCCHPAL AD +V
Sbjct: 63  RFKAIDALRRRVRFDRSQADLSMLLEGQAQDPSEEELLADDRLRLIFTCCHPALSADAQV 122

Query: 129 ALTLREVCDLTTEEIARAFLAPPATIAQRIVRAKAKIRDARLPYRVPERDELPARLESVL 188
            LTLREVCDLTTE+IARAFL  PATIAQRIVRAKAKIRDA +PY+VPE  ELP RLESVL
Sbjct: 123 PLTLREVCDLTTEQIARAFLQSPATIAQRIVRAKAKIRDAGIPYQVPELSELPERLESVL 182

Query: 189 RVVYLVFNEGYTASAGGELTRADLCAEAIRLGRLLLELLPNAEVMGLLALMLLHDARRAA 248
           RV+YLVFNEGY+AS+G  L +  L  EAIRL RLL++LLP+ E +GLLALMLL  +R+ A
Sbjct: 183 RVIYLVFNEGYSASSGETLLQQALSDEAIRLARLLVQLLPDPEAVGLLALMLLQASRQRA 242

Query: 249 RTDAAGELVRLDEQDRSLWNRQQIAEGAQLVQLALTSRAFGAYALQAAIVAVHAEAPSAA 308
           R D  G+LV L++QDRSLW+RQ IAEG  LV+ AL SRAFGAY +QAAI AVHAEA +A 
Sbjct: 243 RIDGQGDLVVLEQQDRSLWDRQFIAEGCALVRQALQSRAFGAYTVQAAIAAVHAEAATAE 302

Query: 309 QTDWAQIVRLYDVLLQLSPSPVVELNRAVAVAMRDGAEAGLLLVDQLLERGDLQDYHLSH 368
           +TDW +IV LYDVL +  PS VV LNRAVA+A RDG EAGL  V+ +L RG+L DYHL+H
Sbjct: 303 ETDWGEIVGLYDVLQRYWPSAVVALNRAVALAKRDGPEAGLREVEGILARGELLDYHLAH 362

Query: 369 ATRADLLRRLARTDEAREAYRRALRLVQLEPERRFLQRQLASL 411
           A RA+L  +L +  EAR A+++AL L +  PERR ++R+L ++
Sbjct: 363 AARAELHCQLGQVQEARAAWQQALALTRQAPERRHIERRLQAI 405