Pairwise Alignments

Query, 296 a.a., Geranylgeranyl pyrophosphate synthase from Pseudomonas stutzeri RCH2

Subject, 307 a.a., (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) from Variovorax sp. SCN45

 Score =  142 bits (357), Expect = 1e-38
 Identities = 95/245 (38%), Positives = 129/245 (52%), Gaps = 4/245 (1%)

Query: 44  ALREGTLAPGKRLRPLLLLLALSDLGIDPDIGLDLACALEMIHAASLFLDDMPCMDNASL 103
           A+R   L  GKRLRPLL+L A   +G +    L  ACA E+IHA SL  DD+PCMDN  L
Sbjct: 47  AMRYAVLDGGKRLRPLLVLAASEAVGGNKAAALRAACATELIHAYSLVHDDLPCMDNDVL 106

Query: 104 RRGQPTIHLRFGEDVAVLASVALLSHAYGITATAPRLTPRQRNDAVA-ILARSVGAQGLV 162
           RRG+PT+H++FGE  A+LA  AL + A+ +        P      +  +LAR+ G+QG+ 
Sbjct: 107 RRGKPTVHVKFGEADALLAGDALQALAFELLTPEDDEIPAATQALLCRLLARAAGSQGMA 166

Query: 163 RGQFRDLHGAQEAQQLDAVIATNQLKTASLFTAALEVAALLAGAERTRTRHLQGFANQLG 222
            GQ  DL     A     +   ++LKT +L   ++E+ A            L+ +   +G
Sbjct: 167 GGQAIDLASVGIALDETRLREMHRLKTGALLQGSVEMGAACGSVTPDALAALRDYGAAIG 226

Query: 223 LAFQLLDDIADGLTPEQT-GKNCQQDRT--KATVVSLLGQQAAEQQLATHREAALTHLDA 279
           LAFQ++DDI D     QT GK   +D    K T VSLLG   A  Q       AL  L+ 
Sbjct: 227 LAFQVVDDILDVTADSQTLGKTAGKDAAADKPTYVSLLGLDGARAQARQLLADALAALEK 286

Query: 280 AGLGD 284
           +GL D
Sbjct: 287 SGLAD 291