Pairwise Alignments

Query, 396 a.a., His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. from Pseudomonas stutzeri RCH2

Subject, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  129 bits (323), Expect = 6e-34
 Identities = 85/272 (31%), Positives = 148/272 (54%), Gaps = 10/272 (3%)

Query: 127 DLYRSRKRLARQLEALERSRREQEVLLDELRSTKAELEDAVRMRDDFMSIVSHELKTPLN 186
           +L ++ ++L+ + EAL+R   E      EL++   +L+ + + + +F++ +SHEL+TPLN
Sbjct: 444 ELEQTNEQLSERTEALDRKNDELSQAQLELQARADDLQRSSKYKSEFLANMSHELRTPLN 503

Query: 187 TLILEVQLRKLQLGRNNFAAFSEERLRNMVDKDERQVQSLIRLIDDMLDVSRIRTGKLSI 246
           + ++  +L    L  N     SEE+++   +        L+ LI+D+LD++++  GKL +
Sbjct: 504 SSLILAKL----LAENAEGNLSEEQVK-FAESIYSAGNDLLNLINDILDIAKVEAGKLEV 558

Query: 247 RPSRTDLAELVGNVVESF--AAQMEACGCELRLERAESIIGVWDAFRIEQVLANLLTNAM 304
           RP  T +  LV  +   F   A  +    E+++E    +    D  R+EQ+L NLL+NA+
Sbjct: 559 RPETTQVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLFTDRQRLEQILKNLLSNAI 618

Query: 305 RYGAGKPVQVSVTSCAE-GACIEVRDHGIGISPQSLERIFCQFERAEGSEGS--AGLGLG 361
           ++     V ++V+  A+ G    VRD GIGI+    + IF  F + +G+      G GLG
Sbjct: 619 KFTERGQVSMNVSFQADSGIVFAVRDTGIGIAADQQQAIFGAFHQVDGTSNRRYGGTGLG 678

Query: 362 LFIADQIVRAHNGRIQVQSVEGQGSQFRVLLP 393
           L I+  +     G+I V S  GQGS F ++LP
Sbjct: 679 LSISRDLAHLLGGQINVDSSPGQGSVFSLILP 710



 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 2/118 (1%)

Query: 10   LLIVDDLPENLLALDALLQAPGVRVHQAESAEQALELLLRYE-FALAILDVQMPGMDGFQ 68
            +L+VDD   N+ AL + L+  G  V    +  +A+E L +++   L ++DV MP MDGF+
Sbjct: 1033 VLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHDDIDLVLMDVMMPEMDGFE 1092

Query: 69   LAELMRGTERTKQIPIVFVSAAGRELNYAFKGYESGAVDFMHKPLDAHAVRSKVSVFV 126
               L+R   R +++PI+ V+A   + +   +  ++GA D++ KP+D   + S + V++
Sbjct: 1093 ATRLIRQQPRWRKLPIIAVTAKAMKDDQQ-RCLQAGANDYLAKPIDLDRLFSLIRVWL 1149



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 48/252 (19%), Positives = 99/252 (39%), Gaps = 31/252 (12%)

Query: 10  LLIVDDLPENLLALDALLQAPGVRVHQAESAEQALELLLRYEFALAILDVQMPGMDGFQL 69
           +L+++D P     L  L    G     A  A++  EL  +Y     +LD+++P   G  +
Sbjct: 765 ILVIEDEPNFARILFDLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTV 824

Query: 70  AELMRGTERTKQIPIVFVSAAGRELNYAFKGYESGAVDFMHKPLDAHAVRSKVSVFVDLY 129
            + ++    T+ IP+  +S   R           GAV +  KP     ++    VF  L 
Sbjct: 825 LQRLKEQASTRHIPVHIISVEDR----VEAAMHMGAVGYAVKPTSREELK---EVFARLE 877

Query: 130 RSRKRLARQLEALERSRREQEVLLDELRSTKAELEDAVRMRDDFMSIVSHELKTPLNTLI 189
               +  + +  +E    ++E +   +     E+  AV M  D ++++   +    + +I
Sbjct: 878 AKLTQKLKHILLVEDDDLQRESIARLIGDDDVEI-TAVAMAQDALALLRQNI---YDCMI 933

Query: 190 LEVQLRKLQLGRNNFAAFSEERLRNMVDKDERQVQSLIRLIDDMLDVSRIRTGKLSIRPS 249
           ++++L  +            E L+ M  +D R    +I           + TG+   R  
Sbjct: 934 IDLKLPDM---------LGNELLKRMTAEDIRAFPPVI-----------VYTGRNLTREE 973

Query: 250 RTDLAELVGNVV 261
             DL +   +++
Sbjct: 974 EADLLKYSRSII 985



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 9   NLLIVDDLPENLLALDALLQAPGVRVHQAESAEQALELLLRYEFALAILDVQMPGMDGFQ 68
           ++L+V+D      ++  L+    V +     A+ AL LL +  +   I+D+++P M G +
Sbjct: 886 HILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLGNE 945

Query: 69  LAELMRGTERTKQIPIVFVSAAGREL 94
           L + M   E  +  P V V   GR L
Sbjct: 946 LLKRMT-AEDIRAFPPVIV-YTGRNL 969