Pairwise Alignments

Query, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

Subject, 787 a.a., RNA-binding transcriptional accessory protein from Magnetospirillum magneticum AMB-1

 Score =  986 bits (2548), Expect = 0.0
 Identities = 513/781 (65%), Positives = 606/781 (77%), Gaps = 16/781 (2%)

Query: 3   SINSRIANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRYLR 62
           +I +RIA ELGV+P QVAA V +LDEG+TVPFIARYRKE T  LDDTQLRNLEERL YLR
Sbjct: 12  AITNRIALELGVKPSQVAATVQMLDEGATVPFIARYRKEATDGLDDTQLRNLEERLGYLR 71

Query: 63  ELDERRASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAGLG 122
           EL++RRA+IL SIEEQGKLTP+L  +I  AD+K RLEDLYLPYK KRRTK QIA EAGL 
Sbjct: 72  ELEDRRAAILRSIEEQGKLTPDLAGQIGEADSKARLEDLYLPYKPKRRTKAQIAREAGLE 131

Query: 123 ELADALFGNPDLTPEQEAERFIDAEKGFADVKAVLEGAKYILMERFAEDADLLAKLRDFL 182
            LADAL  +P L PEQ AE ++DAEKG ADVKA L+GA+ ILMERFAEDA+LL  LRD L
Sbjct: 132 PLADALLADPALVPEQAAEPYVDAEKGVADVKAALDGARQILMERFAEDAELLGNLRDAL 191

Query: 183 KHNATLSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGILSVSLKVGDE 242
                L + V  GK   GAKFSDYF++ E +K  PSHRALA+FRGRNE +L++ L   DE
Sbjct: 192 WDGGVLISTVAEGKSEAGAKFSDYFDYREAIKAIPSHRALALFRGRNENVLNLKLLTPDE 251

Query: 243 TPG-----SMHPGE--GMIGERFGIANRGRAADKWLGEVVRWTWKVKLYTHLETDLLGEL 295
                   S  PGE    I  RF + +  R AD WL E VRW W++K++ HLE +L+  L
Sbjct: 252 AARPDGTVSQGPGEFEARIARRFSVRDLKRPADSWLAETVRWAWRIKIHLHLELELMSRL 311

Query: 296 RDKAEDDAIGVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKLLETATVYP 355
           R+ AE +AI VFARNL  LLL APAG R  + LDPG+RTG KVAV DATGK++ETAT+YP
Sbjct: 312 REAAEAEAINVFARNLRALLLQAPAGARNCIGLDPGIRTGVKVAVTDATGKVVETATIYP 371

Query: 356 HAPRNDWDGTLAILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLKLTKIMVSE 415
           H PRNDW G++A +A L  KH + L+AIGNGTASRE+D+L  +++++ P L L K++VSE
Sbjct: 372 HQPRNDWQGSVAAIAHLARKHGIKLVAIGNGTASRETDRLVIDVMKRHPDLGLEKLVVSE 431

Query: 416 AGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQL 475
           AGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPK+IGVGQYQHDV Q+
Sbjct: 432 AGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQV 491

Query: 476 KLARSLDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELK 535
           KL RSLDAVVEDCVNAVGV+VNTASA LLAR++GL+ T+A+N+V+FRD  G F SR  LK
Sbjct: 492 KLGRSLDAVVEDCVNAVGVEVNTASAPLLARVAGLSPTVARNVVEFRDRFGPFASREALK 551

Query: 536 KVPRLGEKTFEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRSLIGDSAFL 595
           +V RLG K FEQAAGFLRV+ G NPLD+SAVHPE YP+V+RI + TGR +++LIGDS+F+
Sbjct: 552 QVERLGAKAFEQAAGFLRVVGGVNPLDSSAVHPEAYPVVERIVKATGRPVKALIGDSSFI 611

Query: 596 KRLDPKQFTDEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGV 655
           + LDPK+FTDE FG  TV DIL+ELEKPGRDPRPEFKTA F+EGVE L+DL+PGM+LEGV
Sbjct: 612 RSLDPKEFTDERFGEPTVKDILKELEKPGRDPRPEFKTAAFKEGVETLNDLKPGMILEGV 671

Query: 656 VTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRQRVGL 715
           VTNVTNFGAFVDIGVHQDGLVHIS L+++FVKDP+EVVK GD+VKVKV+EVDI R R+ L
Sbjct: 672 VTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVKVLEVDIKRSRIAL 731

Query: 716 SMRM--SDTPGAKTDGPRGGQARGSAGKPQGNTPRSERHAKEDKPAPANAAMAALFANAK 773
           SMRM     P  K D PR  + R +   PQ      +R     K      A AA FA A+
Sbjct: 732 SMRMDAQPAPARKDDAPRRDERRPA---PQA----QQRQPAAPKADEGGGAFAAAFAKAR 784

Query: 774 Q 774
           Q
Sbjct: 785 Q 785