Pairwise Alignments

Query, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

Subject, 776 a.a., Transcription accessory protein (S1 RNA-binding domain) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  923 bits (2386), Expect = 0.0
 Identities = 489/775 (63%), Positives = 591/775 (76%), Gaps = 14/775 (1%)

Query: 2   DSINSRIANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRYL 61
           DS    IA E+     QV AAV LLDEG+TVPFIARYRKE+TG LDDTQLRNLE RL YL
Sbjct: 4   DSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLGYL 63

Query: 62  RELDERRASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAGL 121
           REL++RR +IL SI EQGKLT EL   I+   +KT LEDLYLPYK KRRT+GQIA+EAGL
Sbjct: 64  RELEDRRQAILKSISEQGKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGL 123

Query: 122 GELADALFGNPDLTPEQEAERFIDAEKGFADVKAVLEGAKYILMERFAEDADLLAKLRDF 181
             LAD L+  P   P+ EA ++ID +KG AD KA L+GA+YILMERFAEDA LLAK+RD+
Sbjct: 124 EPLADLLWNEPSHDPDVEAAKYIDGDKGVADTKAALDGARYILMERFAEDAALLAKVRDY 183

Query: 182 LKHNATLSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGILSVSLKVG- 240
           L  NA L A VV GKE EGAKF DYF+H E + N PSHRALA+FRGRNEGIL +SL    
Sbjct: 184 LWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLNADP 243

Query: 241 --DETPGSMHPGEGMIGERFGIANRGRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDK 298
             DE P   +  E +I +  G+      AD W   VV WTW++K+  HLET+L+G +R++
Sbjct: 244 QFDEPPKESYC-EQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRER 302

Query: 299 AEDDAIGVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKLLETATVYPHAP 358
           AED+AI VFARNLHDLL+AAPAG RAT+ LDPGLRTG KVAVVD TGKL+ T T+YPH  
Sbjct: 303 AEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHTG 362

Query: 359 RNDWDGTLAILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLKLTKIMVSEAGA 418
           +     T  ++A LC K+ V+L+AIGNGTASRE+++   ++ ++ P +   K++VSEAGA
Sbjct: 363 QAAKAAT--VIAALCEKYHVELVAIGNGTASRETERFYLDVQKQFPNVTAQKVIVSEAGA 420

Query: 419 SVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLA 478
           SVYSASELAA+EFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQ +LA
Sbjct: 421 SVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLA 480

Query: 479 RSLDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELKKVP 538
           R LDAVVEDCVNAVGVD+NTAS  LL R++GL   +AQNIV +RD NG F++R +L KV 
Sbjct: 481 RKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVS 540

Query: 539 RLGEKTFEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRSLIGDSAFLKRL 598
           RLG K FEQ AGFLR+ +G+NPLDAS VHPE YP+V+RI   T + ++ L+G+S  L+ L
Sbjct: 541 RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHL 600

Query: 599 DPKQFTDEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTN 658
               FTD+ FG+ TVSDI++ELEKPGRDPRPEFKTA+F +GVE ++DL PGM+LEG VTN
Sbjct: 601 KAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTN 660

Query: 659 VTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRQRVGLSMR 718
           VTNFGAFVDIGVHQDGLVHIS+LS KFV DP+ VVKAGDIVKVKV+EVD+ R+R+ L+MR
Sbjct: 661 VTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMR 720

Query: 719 MSDTPGAKTDGPRGGQARGSAGKPQGNTPRSER---HAKEDKPAPANAAMAALFA 770
           + + PG +T   RG    G A + QGN P S+      ++ +PA  +A M AL A
Sbjct: 721 LDEQPG-ETAARRG----GGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAA 770