Pairwise Alignments

Query, 777 a.a., Transcriptional accessory protein from Pseudomonas stutzeri RCH2

Subject, 772 a.a., RNA-binding transcriptional accessory protein from Erwinia tracheiphila SCR3

 Score =  920 bits (2377), Expect = 0.0
 Identities = 486/778 (62%), Positives = 590/778 (75%), Gaps = 21/778 (2%)

Query: 2   DSINSRIANELGVRPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRNLEERLRYL 61
           DS+N  IANEL  R +QV AAV LLDEG+TVPFIARYRKEVTG LDDTQLR LE RL YL
Sbjct: 4   DSLNHIIANELQARTEQVDAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRQLETRLGYL 63

Query: 62  RELDERRASILASIEEQGKLTPELKREIDLADTKTRLEDLYLPYKQKRRTKGQIALEAGL 121
           REL+ERR SIL SI+EQGKL  EL   I    +KT LEDLYLPYK KRRT+GQIA+EAGL
Sbjct: 64  RELEERRQSILKSIDEQGKLNDELAIAIRSTLSKTELEDLYLPYKPKRRTRGQIAIEAGL 123

Query: 122 GELADALFGNPDLTPEQEAERFIDAEKGFADVKAVLEGAKYILMERFAEDADLLAKLRDF 181
             LAD L+ +P  +PEQ A  ++DAEKG  D KA L+GA+YILMERFAEDA LLAK+R++
Sbjct: 124 APLADQLWQDPSHSPEQLAANYVDAEKGVTDSKAALDGARYILMERFAEDATLLAKVREY 183

Query: 182 LKHNATLSARVVPGKENEGAKFSDYFEHDEVLKNTPSHRALAIFRGRNEGILSVSLKVG- 240
           L  NA L +RV+ GKE EGAKF DYF H E L + PSHRALA+FRGRNEGIL +SL    
Sbjct: 184 LWKNAHLVSRVLEGKEEEGAKFRDYFTHHESLSSVPSHRALAMFRGRNEGILQLSLNADP 243

Query: 241 --DETPGSMHPGEGMIGERFGIANRGRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDK 298
             DE P   H GE +I +   +      AD W   VV WTW++K+  HLET+L+G +R++
Sbjct: 244 QFDEPPRESH-GEQIIADHLNLRLNNAPADSWRKAVVSWTWRIKVLLHLETELMGSVRER 302

Query: 299 AEDDAIGVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKLLETATVYPHAP 358
           AED+AI VFARNLHDLL+AAPAG RAT+ LDPGLRTG KVAVVDATGKL+ T T+YPH  
Sbjct: 303 AEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHTG 362

Query: 359 RNDWDGTLAILAKLCAKHAVDLIAIGNGTASRESDKLAGELIQKVPGLKLTKIMVSEAGA 418
           +       + +A LC +H V+L+AIGNGTASRE+++   ++ ++ P +   K++VSEAGA
Sbjct: 363 QAA--KAASAVAALCTRHQVELVAIGNGTASRETERFFLDVQKQFPQVNAQKVIVSEAGA 420

Query: 419 SVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLA 478
           SVYSASELAA EFPDLDVS+RGAVSIARRLQDPL+ELVKIDPKSIGVGQYQHDVSQ +LA
Sbjct: 421 SVYSASELAALEFPDLDVSIRGAVSIARRLQDPLSELVKIDPKSIGVGQYQHDVSQSQLA 480

Query: 479 RSLDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELKKVP 538
           + LDAVVEDCVN VGVD+NTAS  LL R++GL+  +AQNIV +RD +G F+ R +L KV 
Sbjct: 481 KKLDAVVEDCVNGVGVDLNTASVPLLTRVAGLSKMIAQNIVSWRDEHGRFQDRQQLLKVS 540

Query: 539 RLGEKTFEQAAGFLRVMNGENPLDASAVHPETYPLVKRIAQDTGRDIRSLIGDSAFLKRL 598
           RLG K FEQ AGFLR+ +G+NPLDAS VHPE YP+V+RI   T + +  L+G+++ L+ L
Sbjct: 541 RLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVQRILTATRQVLADLMGNASALRNL 600

Query: 599 DPKQFTDEGFGLVTVSDILQELEKPGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTN 658
               FTDE FG+ TVSDI++ELEKPGRDPRPEFKTA+F EG+E ++DL PGMVLEG VTN
Sbjct: 601 RAVDFTDERFGVPTVSDIIKELEKPGRDPRPEFKTAQFAEGIETMNDLLPGMVLEGAVTN 660

Query: 659 VTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRQRVGLSMR 718
           VTNFGAFV+IGVHQDGLVHIS+LS+KF+ DP++VVKAGDIVKVKVMEVD+ R+R+ L+MR
Sbjct: 661 VTNFGAFVNIGVHQDGLVHISSLSDKFIDDPHKVVKAGDIVKVKVMEVDLQRKRIALTMR 720

Query: 719 MSDTPGAKTDGPRGGQARGSAGKPQGNTPRSERHAKEDKPAPA----NAAMAALFANA 772
           + + PG  T   R   AR S  + Q           + +PAP+    N+AM    A A
Sbjct: 721 LDEQPG-DTSARRSDSARTSPRQSQ----------SKPRPAPSQPAGNSAMGDALAAA 767