Pairwise Alignments

Query, 87 a.a., DNA-directed RNA polymerase, omega subunit from Pseudomonas stutzeri RCH2

Subject, 91 a.a., RNA polymerase, omega subunit from Escherichia coli BL21

 Score = 80.9 bits (198), Expect = 3e-21
 Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 6/85 (7%)

Query: 1  MARVTVEDCLDNVDNRFELVMLATKRSRQLATGGKEPKVPWENDKPTVVALREIASGLVD 60
          MARVTV+D ++ + NRF+LV++A +R+RQ+  GGK+P VP ENDK TV+ALREI  GL++
Sbjct: 1  MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60

Query: 61 YDVIAQDEIVDDEPLFTQYEEEPNE 85
                ++I+D      Q E+E  E
Sbjct: 61 ------NQILDVRERQEQQEQEAAE 79