Pairwise Alignments

Query, 323 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

Subject, 337 a.a., TRAP-type transport system, periplasmic component from Variovorax sp. SCN45

 Score =  122 bits (305), Expect = 2e-32
 Identities = 87/334 (26%), Positives = 155/334 (46%), Gaps = 19/334 (5%)

Query: 1   MNLKRKLLVTALPFAFCISGLA----------HAMTLKIAEIHPAGYPTVVAMENLGKKL 50
           MN+ R+   T L  A   S LA          +A   K A   P  +P  +  + +   +
Sbjct: 1   MNINRR---TVLRTAAAASTLALPLRQALAQKNAFNYKYANNLPVSHPMNLRAKEMADAI 57

Query: 51  ETATNGEIKSRMFAGGVLGSEKEVIEQTQIGAVQLTRVSLGSVGPVVPATNVFNMPFVFR 110
              TNG++  ++F    LGS+ +V+ Q + G V+   +S   +  +VP+ ++  + F F 
Sbjct: 58  RAETNGQVDIQIFPNNQLGSDTDVLSQLRSGGVEFFTLSGLILSTLVPSASISGVGFAFP 117

Query: 111 DIDHMRKVVDGEIGQEILDAITNSDFNMVGLAWMEAGSRSLYTKKPIRRIEDLKGMKIRV 170
           D   + K +DG++G  I   I  ++   +   W     +   + KPI    DLKG KIRV
Sbjct: 118 DYASVWKAMDGDLGSHIRTQIAKANIVAMDKIWDNGFRQITSSSKPIASPADLKGFKIRV 177

Query: 171 IGNPLFIDTLNAMGANGIAMDTGEIFSALQSGVIDGAENNSPTLLEHNHFRVAKHYTQTH 230
             +PL+     A+ A+  +++  E++SALQ+ ++DG EN    +     + V K+ + ++
Sbjct: 178 PVSPLWTSMFKALEASPTSINFAEVYSALQTKIVDGQENPLAIISTAKLYEVQKYCSMSN 237

Query: 231 HLILPEPLLMSKDTWNKLSPEQQATVKKLAKEAQLEERDLWVAKETASNEKLKAEGVEFI 290
           H+      L ++  W+K+  + QA V K    A + ER           ++L A+G++  
Sbjct: 238 HMWDGFWFLANRRAWDKMPADLQAIVAKHINAAGMRERADVAELNANLQKELSAKGMQIN 297

Query: 291 EVDTKPFYDAT------APVREKYGAQFAELIKR 318
           + D   F D        A  + KYG +   L++R
Sbjct: 298 QPDPAAFRDQLRKAGFYAEWKSKYGDEAWALLER 331