Pairwise Alignments

Query, 323 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Pseudomonas stutzeri RCH2

Subject, 339 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

 Score =  164 bits (416), Expect = 2e-45
 Identities = 97/319 (30%), Positives = 169/319 (52%), Gaps = 11/319 (3%)

Query: 5   RKLLV-----TALPFAFCISGLAHAMTLKIAEIHPAGYPTVVAMENLGKKLETATNGEIK 59
           R+LLV     TA+  A  ++      TLK A  +  G+P  +  +     +   ++G++K
Sbjct: 8   RRLLVATVAATAVLAASGVAAQVKERTLKFAFQNQTGHPQALGAQKFADLVAAKSDGKMK 67

Query: 60  SRMFAGGVLGSEKEVIEQTQIGAVQLTRVSLGSVGPVVPATNVFNMPFVFRDIDHMRKVV 119
            ++FAGGVLG + + +   Q G ++LT ++ G +   V     ++ PF+F D      V 
Sbjct: 68  VKLFAGGVLGGDLQTVSALQGGTIELTVLNAGILSAQVKEFAAYDFPFLFNDGKEADAVT 127

Query: 120 DGEIGQEILDAITNSDFNMVGLAWMEAGSRSLY-TKKPIRRIEDLKGMKIRVIGNPLFID 178
           DG  GQ+++  +   D  + GL + + G R+L  +++PI R +D+ G+KIRVI +P++ID
Sbjct: 128 DGPFGQKLMAKL--EDKGLYGLGYWDLGFRNLTNSRRPITRADDITGLKIRVIQSPIYID 185

Query: 179 TLNAMGANGIAMDTGEIFSALQSGVIDGAENNSPTLLEHNHFRVAKHYTQTHHLILPEPL 238
             +A+GAN   +   E++ AL+   +DG EN + T+L      V K+ TQT H+  P+ L
Sbjct: 186 VFSALGANATPLPFPELYPALEQKAVDGQENPNTTILSSKFSEVQKYITQTRHIYNPQAL 245

Query: 239 LMSKDTWNKLSPEQQATVKKLAKEAQLEERDLWVAKETASNEKLKAEGVEFIEVDTKPFY 298
           L+SK TW+ +S E++  + + + EA + +R         + + LK  G+   E+  +   
Sbjct: 246 LISKKTWDSMSAEEKKILTQASNEATVFQRAASRGAADGALDALKKAGMTVSEISPEEMT 305

Query: 299 DATA---PVREKYGAQFAE 314
              A   PV +KY A   +
Sbjct: 306 KLRAKVKPVIDKYAASVGD 324