Pairwise Alignments

Query, 805 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 603 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  132 bits (331), Expect = 7e-35
 Identities = 135/516 (26%), Positives = 219/516 (42%), Gaps = 35/516 (6%)

Query: 288 LAWQRRQHGV-LESRLKTARR-DIELREAAEEAQRLTQFCLDHSTVGILWLNWDSRVRYA 345
           L  + R H + LE + +  RR  +EL E+ +    L +F    + VG + L     +  A
Sbjct: 99  LLHELRVHQIELEMQNEELRRVQLELEESRDRYIDLYEF----APVGYVTLGSSGHIESA 154

Query: 346 NQAAEVLLGHSSGGLLDQPLERFDPALGMDAWLARWRAA--RTGEDDRQVHECEWLRADG 403
           N     +LG     LL          +  D W  R+ AA     ED  +  +    R D 
Sbjct: 155 NLTLSSMLGFERSALLKLRFSALVSEVSGDDW-HRFMAAILNDQEDPHRTTDLRLRRRDE 213

Query: 404 QRFPAAVTYSFLRFGSREYLV-VFLADITERRRASAQLQESEARLKAMAGNVPGLVFRLE 462
               A +    +       +V V + DIT  ++    LQ SE R   +A +        E
Sbjct: 214 GTIEARLDCLRVTNAVHGAMVRVAITDITRIKQTEIALQASEKRYSLLAAST------FE 267

Query: 463 RDGPQAPVRVAYISEASQRLVGYSAERLLQPGQGIRSLVHADDEAGYWASQQLALEKSQD 522
                A  R+  ++E    ++G+    L+  G+ +  L+  +D      +    + +  +
Sbjct: 268 GIAISAKGRIVDVNEQLVEMLGFPRAELI--GRPVAELISDEDRDRVMDN----IHRGHE 321

Query: 523 WRWQGRILNRNGEVRWADIRASVRGQP---DGRQVWDGIVWDITDNKRIEL--ELDASRA 577
              +  ++ R+G    + I     GQP   DGR      + DIT  K  E    +     
Sbjct: 322 SHIEHGMVRRDG----SRIEVEAHGQPFSDDGRAFRLTALRDITARKEDEAAARIALHME 377

Query: 578 QLRELAAHLETVREEEKAHIAREVHDELGQVLTVLKLETSMCELGFADLDPALAQRLESM 637
            LR LA       E E+  IA+++HD LGQ L + + +            P     LE +
Sbjct: 378 HLRNLAIEATLSEERERHSIAKDLHDGLGQTLHLARFKLDRLVKALPQELPTATLALELI 437

Query: 638 KRLIAQLFQRVRDVATALRPPIL-DAGIASAVEWQARRFEERSGVACLVEVPECPPALGN 696
             L+++    VR + + L PP L D G+ +A+ W A     R G+  +VE    P  L  
Sbjct: 438 G-LLSEASGEVRSLTSKLSPPALKDLGLVAAISWLADEMGRRRGLQVVVEDDGVPKPLTE 496

Query: 697 AKAIGLFRILQESLTNVMRHARAQTVSVQLQLEGDLLCLRVSDDGCGFAD--AGRSAGSS 754
            ++  LFR ++E + N+ +HA   +  + L++  + L + V+D G GF D  A   A   
Sbjct: 497 GQSTLLFRAVRELVINIAKHAGVGSARIGLRVCNNRLIITVADKGVGFIDWRATLEARRG 556

Query: 755 FGLVGMRERIQMLGGQLCIDSQPGEGTTITARVPLD 790
           FGL  +RERI  L G + I ++PGEGTT+   +P D
Sbjct: 557 FGLSSVRERITFLKGVMDIQTRPGEGTTVVLEMPFD 592