Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 532 a.a., ATP-dependent RNA helicase RhlE from Xanthobacter sp. DMC5

 Score =  290 bits (743), Expect = 6e-83
 Identities = 171/409 (41%), Positives = 243/409 (59%), Gaps = 6/409 (1%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           M+F+ LGL D +L  +    Y  PTP+Q +AIP VL  RD++  AQTGTGKTA F LP+L
Sbjct: 1   MSFSELGLSDKVLAAVADTGYTTPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPML 60

Query: 61  QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
             L  E  +  +   R L+L PTRELA QV E+F  YG+   L    + GGVS   Q   
Sbjct: 61  TLL--EQGRARARMPRTLILEPTRELAAQVEENFTRYGKYSKLNVALLIGGVSFGDQDTK 118

Query: 121 LRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKR 180
           L +G+DVL+ATPGRLLD   +  +  + ++ LV+DEADRMLD+GF  +++++   +P  R
Sbjct: 119 LVRGVDVLIATPGRLLDHVERGRLLLSGIEVLVIDEADRMLDMGFIPDIERICKLVPFTR 178

Query: 181 QTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKK--RKSELFLHL 238
           QTL FSAT    I+++  + L  P+ VEVS   + A TV Q LV   ++   K E+   L
Sbjct: 179 QTLFFSATMPPEIQRLVSQFLSSPVRVEVSKPASTATTVTQELVASGREDYEKREVLREL 238

Query: 239 LAE-KRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQV 297
           +   +     ++F   ++ V  L   LQ  G ++ A+HGD  Q +R++AL+ F+ GE  +
Sbjct: 239 IRSCENLQNGIIFCNRKRDVAVLHRSLQKHGFNAVALHGDMDQHARIKALDEFRNGEATL 298

Query: 298 LVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLA 357
           LVA+DVAARGLDI  +  V N+D+P  +EDYVHRIGRTGRAG  G A ++V+  +   L+
Sbjct: 299 LVASDVAARGLDIPAVSHVFNYDVPHHSEDYVHRIGRTGRAGRAGTAYTMVTHLDAKSLS 358

Query: 358 AIETLINQVLPRHD-ELGFVPDHRVPTTTLGGQIIKKPKKPKKPKDAGG 405
           AIE LI   +P H   LG  P          G++  K +  K+P++  G
Sbjct: 359 AIEKLIGNPIPWHGAPLGDAPPASERRGRDDGRLRGKRRMDKEPREGRG 407