Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  385 bits (990), Expect = e-111
 Identities = 210/414 (50%), Positives = 279/414 (67%), Gaps = 16/414 (3%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           M+FASLGL + L+R +E   Y +PTPVQ  AIPAVL+GRDLM AAQTGTGKT GFALP+L
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  QRLTMEGAKVASN-----SVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSIN 115
           +RL   G    S        R LVL PTRELA QVH+SF+VY ++LPL +  ++GGV +N
Sbjct: 61  ERLFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIFGGVGMN 120

Query: 116 PQMMALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSA 175
           PQ+ A+ KG+DVLVA PGRLLDL  Q  V    ++ LVLDEADRMLD+GF  ++ ++ + 
Sbjct: 121 PQIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180

Query: 176 LPKKRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELF 235
           LP KRQ LLFSATFS+ I  +A +LL +P  +EV+P N   + ++Q +  +    K  L 
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL 240

Query: 236 LHLLAEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEV 295
            HL+    W QVLVF +T+ G ++L + L+  G+++ AIHG+K Q +R +AL  FKA  V
Sbjct: 241 AHLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSV 300

Query: 296 QVLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQ 355
           +VLVATD+AARGLDI  LP VVNF+LP V EDYVHRIGRTGRAG +GEA+SLV+ DE   
Sbjct: 301 RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 356 LAAIETLINQVLPRHDELGFVPDHRVPTTTLGGQI-IKKPKKPKKPKDAGGKGK 408
           L +IE +  Q +   D +GF             Q+  +KP+  ++P++ G  G+
Sbjct: 361 LKSIERVTKQRIADGDLMGFD----------ASQVEAEKPEARERPQNNGRGGR 404