Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  629 bits (1622), Expect = 0.0
 Identities = 322/444 (72%), Positives = 366/444 (82%), Gaps = 6/444 (1%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           M FA LGLI+PLLRTL+ LDY  PTPVQ +AIPAVL GRDLMAAAQTGTGKTAGFALP+L
Sbjct: 1   MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL 60

Query: 61  QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
           QRL +EG KVASNS+RALVLVPTRELAEQVH + R Y +NLPL TYAVYGGVSINPQMM 
Sbjct: 61  QRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYAVYGGVSINPQMMR 120

Query: 121 LRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKR 180
           LR+G+D+LVATPGRLLDL+RQNAV FNQ+Q LVLDEADRMLDLGFA+EL  +++ALP+KR
Sbjct: 121 LRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKR 180

Query: 181 QTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLA 240
           QTLLFSATFS+ IR +A   L DPLS+EVSPRNA A +VKQWLVPVDKKRK++LF HLL 
Sbjct: 181 QTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATAASVKQWLVPVDKKRKADLFCHLLR 240

Query: 241 EKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLVA 300
           ++RW QVLVF KTR GVDQLV+ L A G+++D IHGD+PQA+R RAL+ FKA EVQVLVA
Sbjct: 241 KQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA 300

Query: 301 TDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAIE 360
           TDVAARGLDI DLP VVN DLPIVAEDYVHRIGRTGRAG  GEA+SLV ADEV  LAAIE
Sbjct: 301 TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIE 360

Query: 361 TLINQVLPRHDELGFVPDHRVPTTTLGGQIIKKPKKPKKPKDAGGKGKIHLGNWFDESEK 420
            L  Q LPRH+E  F+P+HRVP T   GQ+IKKPKKPKKPK+     K  LG W D +E 
Sbjct: 361 VLTRQTLPRHEEPDFIPEHRVPMTDASGQVIKKPKKPKKPKE--NSAKRGLGRWMDSTEA 418

Query: 421 PNAKP----IRKVPSLGGGKPAKK 440
            +A+P    +RKVPS  GG   +K
Sbjct: 419 ASAEPAVKAVRKVPSFNGGPRKRK 442