Pairwise Alignments

Query, 459 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 459 a.a., ATP-dependent RNA helicase DbpA from Rhodanobacter sp000427505 FW510-R12

 Score =  493 bits (1270), Expect = e-144
 Identities = 254/455 (55%), Positives = 329/455 (72%), Gaps = 1/455 (0%)

Query: 6   FSSLPLSAAMLANLDALGYAAMTPIQAQSLPVMLKGHDLIAQAKTGSGKTAAFGIALLEP 65
           FS+LPL  A+LA++D LGYA MTP+QAQSLP ML+G D+IAQA+TGSGKTAAFG++LL+ 
Sbjct: 4   FSTLPLKPALLASVDTLGYAEMTPVQAQSLPPMLQGRDVIAQAQTGSGKTAAFGLSLLQA 63

Query: 66  LNPRYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEHGAH 125
           L+      QALVLCPTRELADQV+K +R+LA    N+K+LTLCGG+ +GPQ+ASL H  H
Sbjct: 64  LDADTIRLQALVLCPTRELADQVSKAIRKLAANIPNVKLLTLCGGMPLGPQLASLSHDPH 123

Query: 126 VIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPARRQTLLFS 185
           ++VGTPGRVQEHLK+G+L   G+  LVLDEADRMLDMGF +AI +IIG+     QTLLFS
Sbjct: 124 IVVGTPGRVQEHLKRGSLHGGGIKVLVLDEADRMLDMGFSEAIDDIIGRIAKHHQTLLFS 183

Query: 186 ATYPAGIKQLSASFMRDPQQVRAEA-LHDDAQIEQRFYEIDPEQRMEAVTRLLASFRPES 244
           ATYP  I+  S    +DP  V  EA     + IEQ+F E++P Q+++A+ +LLA  R + 
Sbjct: 184 ATYPDEIRAASQRVQKDPVVVTVEAPAARRSAIEQQFIEVEPAQKLDALAQLLAGERGQH 243

Query: 245 CVAFCFTKQQCQELVDHLSANGISAMALNGDLEQRDRDQVLAMFANRSLSVLVATDVAAR 304
            + FC  ++    +   L   G SA+AL+GD+EQRDRD+VL  FANRS +VLVATDVAAR
Sbjct: 244 ALVFCNMRRDVDAVAQELDRRGYSALALHGDMEQRDRDEVLVRFANRSCNVLVATDVAAR 303

Query: 305 GLDIDALDMVINVELARDAEIHVHRVGRTGRAGNQGLAVSLVAPAEAHRAQAIEKLQQAP 364
           GLDI AL +V++ ++A D + H HR+GRTGRAG  GLA++L  P E  +A  IE+ Q  P
Sbjct: 304 GLDIAALPLVLSYDVAHDPDTHTHRIGRTGRAGETGLAITLCTPRERPKAANIEEAQGVP 363

Query: 365 LNWQPLDGLKPKGGAPLQPPMATLCIGAGRKDKLRPGDILGALTGDAGIPGTQVGKIAIF 424
           L W+ L    P+G      PM TL I AGR+DKLRPGDILGALTGDAG+    +GKI +F
Sbjct: 364 LPWRTLKLAPPRGKTLHLAPMKTLVIDAGRQDKLRPGDILGALTGDAGLEAKDIGKIDVF 423

Query: 425 DFQAFVAVERGVVKQALKRLNEGKIKGRSLKVRVL 459
             +A+VA+ R +  +AL+RL  G+IKGR+ +VR L
Sbjct: 424 ATRAYVAISRALANKALERLRAGRIKGRNFRVRPL 458