Pairwise Alignments

Query, 459 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  275 bits (704), Expect = 2e-78
 Identities = 148/356 (41%), Positives = 219/356 (61%), Gaps = 1/356 (0%)

Query: 6   FSSLPLSAAMLANLDALGYAAMTPIQAQSLPVMLKGHDLIAQAKTGSGKTAAFGIALLEP 65
           F++L L+  ++A + A GY   + IQ QS+P++L GHD+I QA+TG+GKTAAF + +L  
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 66  LNPRYFGCQALVLCPTRELADQVAKELRRLARAADNIKILTLCGGVSIGPQIASLEHGAH 125
           ++      QAL+L PTRELA QVA      A+    + ++ + GG  +GPQ+ ++ +GA 
Sbjct: 68  IDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNGAQ 127

Query: 126 VIVGTPGRVQEHLKKGTLKLDGLNTLVLDEADRMLDMGFYDAIAEIIGQTPARRQTLLFS 185
           ++V TPGR+ +HL++    L  +  LVLDEAD ML +GF D +  I    PA RQT+LFS
Sbjct: 128 IVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLFS 187

Query: 186 ATYPAGIKQLSASFMRDPQQVRAEA-LHDDAQIEQRFYEIDPEQRMEAVTRLLASFRPES 244
           AT P+ I+ ++   +R+P+ V+ +        IEQ    +  +Q++ AV RLL     ++
Sbjct: 188 ATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDA 247

Query: 245 CVAFCFTKQQCQELVDHLSANGISAMALNGDLEQRDRDQVLAMFANRSLSVLVATDVAAR 304
            +AF  TKQ   +L   L A G  A ALNGD+ Q  R++V+    +  L ++VATDVAAR
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 305 GLDIDALDMVINVELARDAEIHVHRVGRTGRAGNQGLAVSLVAPAEAHRAQAIEKL 360
           GLD+  +  V NV++  D E +VHR+GRTGRAG  G A+ LV P E    Q IE++
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERV 363



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 16/65 (24%), Positives = 37/65 (56%)

Query: 393 GRKDKLRPGDILGALTGDAGIPGTQVGKIAIFDFQAFVAVERGVVKQALKRLNEGKIKGR 452
           G +D +   ++LGA+  + G+    +G+I + D  + V +    +++ L +L + ++ G+
Sbjct: 490 GARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKDTRVAGK 549

Query: 453 SLKVR 457
            LK+R
Sbjct: 550 QLKLR 554