Pairwise Alignments

Query, 732 a.a., hypothetical membrane protein, TIGR01666 from Pseudomonas stutzeri RCH2

Subject, 700 a.a., putative transporter, FUSC superfamily inner membrane protein from Escherichia coli BL21

 Score =  128 bits (321), Expect = 1e-33
 Identities = 174/706 (24%), Positives = 298/706 (42%), Gaps = 81/706 (11%)

Query: 11  RRLWALEKFGYSLRVLIAMAGSMGLSWYLGQPTLIIPLFLGIIASALAETDDSWLGRLNA 70
           RRL       Y+LR  + +   + +   LG+    +   L      +A  D         
Sbjct: 7   RRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVPACCNIAGLDTPHKRFFKR 66

Query: 71  LLVTLLCFSIAAVAVELLF----PYPWLFVAGLAVSTFALVMLGALGERYGAIAQATLIL 126
           L++    F+  ++  +LL     P P+L + GL   T  L +   LG  +  +  A+L+ 
Sbjct: 67  LIIGASLFATCSLLTQLLLAKDVPLPFL-LTGL---TLVLGVTAELGPLHAKLLPASLLA 122

Query: 127 AIYSMIAADQRNGELQHFWRDPLLLVAGAAWYGLLSVCWNALFAHQPVQQSLARLYRELG 186
           AI+++  A          W   L+   G  WYGL +  W  ++  QP+++SL+ LYREL 
Sbjct: 123 AIFTLSLAGY-----MPVWEPLLIYALGTLWYGLFNWFWFWIWREQPLRESLSLLYRELA 177

Query: 187 LYFRYKAALF----EPVRQLDV----EQRRLELAQQNGRVVNALNAAKETLLHRLGNGRA 238
            Y   K +L     +P + L      +Q+ ++L  Q  + ++ L+A   T   R+     
Sbjct: 178 DYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLSAQNNTDYKRM----- 232

Query: 239 GGKINHYLKLYFLAQDLHERVSSS-HYP--YQALAEAFFHSDVLFRCQRLLRLQASACAE 295
                  L+++  A DL E +S S H P   Q L E     +V+    + +  +    A+
Sbjct: 233 -------LRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARLRVLAD 285

Query: 296 LGETIQLRQAFRYSEANGQALEDLQASLEHLREQN--NPAWRGLLRSLRALSGNLSTLQR 353
             + +  R   R++      +E    +LE +  Q+  NP  +        ++  L T + 
Sbjct: 286 --DILYHRLPTRFT------MEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKP 337

Query: 354 QLASASDPGTLEGEQDNSLLDRQPQTLREAFNRIRLQLTPTSLLFRHALRMTIALITGYA 413
             A             + L D+Q +        ++  L+  S   R+A R+++ L     
Sbjct: 338 LYAR------------DLLADKQRRM--PLLPALKSYLSLKSPALRNAGRLSVMLSVASL 383

Query: 414 VLHAIHPEQGYWVLLTTVFVCQPNYGATRIKLVQRISGTVLGL-VAGWALFDLFPSQPIQ 472
           +  A+H  + YW+L+T + V Q  YGATR+++V R  GTV+GL +AG AL    P     
Sbjct: 384 MGTALHLPKSYWILMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTL 443

Query: 473 ALFAVVAGVVFFATRSTRYTLATAAITLMVLFCFNQVG-DGYGLIWPRLFDTLLGSLIAA 531
            L  +     +   R   Y  AT   T+  ++    +  +G   I PRL DT++G LIA 
Sbjct: 444 TLMLITTLASYLILRK-NYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAF 502

Query: 532 AAVFLILPDWQGRRLNQVVANTLSCNSDYLRQIMRQYDSGKRDDLAYRLARRN-AHNADA 590
                + P WQ   L +   + L    + +R I+   +  +   LA++  R N AHN   
Sbjct: 503 GGTVWLWPQWQSGLLRKNAHDALEAYQEAIRLILS--EDPQPTPLAWQRMRVNQAHN--- 557

Query: 591 ALSTTLSNMLLEP---GHFRKDAE---TGFRFLILSHTLLNYLSGLGAHRESLPDDARDA 644
            L  +L+  + EP    H+  D +   T  +F++     +  L+    HR   P+ A++ 
Sbjct: 558 TLYNSLNQAMQEPAFNSHYLADMKLWVTHSQFIVEHINAMTTLA--REHRALTPELAQEY 615

Query: 645 L--LESAAQQLAASL--DDLAAALAQNRPIAIYSEEEEALAQQLEQ 686
           L   E A Q+    L  D+  ++   N   A   +  E  A  LEQ
Sbjct: 616 LQSCEIAIQRCQQRLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQ 661