Pairwise Alignments

Query, 328 a.a., Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs from Pseudomonas stutzeri RCH2

Subject, 287 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 56.2 bits (134), Expect = 9e-13
 Identities = 81/326 (24%), Positives = 131/326 (40%), Gaps = 64/326 (19%)

Query: 3   PFSYQRPERIDQAIAL---HGPQSRYIAGGTNLLDLMKENVLQPGQLIDINGLP-LRDIE 58
           PF  +RP  I  A+AL    G  ++ +AGG +L  ++   +  P  ++D++G+  LR + 
Sbjct: 5   PFRIERPRTIADAVALLASGGDGAKVMAGGQSLGPMLNLRLATPDLIVDLSGVDALRTVR 64

Query: 59  QTAEGGLRIGALVSNADLAWHPQIEQRYPLLSKAILAGASPQLRNMASTGGNLLQRTRCY 118
           + A G +  GALV++AD      +E    L                   G N+L+R    
Sbjct: 65  EEA-GHMVYGALVTHAD------VEDGRAL-----------------DVGANILRRV--- 97

Query: 119 YFYDTATPCNKREPGSGCSARDGRNRIHAILGASEHCVAVHPSDMCVALAALDARVHVEG 178
                           G + R  RNR   + G+  H  A   +D   AL+ L A V + G
Sbjct: 98  --------------AGGIAYRAVRNR-GTMGGSLSH--ADPAADWVNALSVLGAEVEIAG 140

Query: 179 PHGQRRLELVDFHRLPGDQPQQDNVLVEGELITAIELPVEGFASHCAYLK-VRDRASYAF 237
           P GQRRL +  F  L G        L  GE++ ++ +P     +   Y+K  R    +A 
Sbjct: 141 PAGQRRLAMGAF--LAG---ALATALEPGEILVSVRVPKVPATARFGYVKHCRKVGEFAH 195

Query: 238 ALVSVAAALEMDGDIIRRARIALGGVAHKPWRLEEAEELLSGK-----RAKPECFAAAAD 292
           A+ +V     +           +G +   P    +A  L  G+       + +  AA A 
Sbjct: 196 AIGAV-----LIDPTTGTGHALMGAIDAPPLVFADAATLFGGQIDAGFATRFDPSAADAA 250

Query: 293 RLLQGAQPLADNAFKVDLARRAIVRA 318
            +  G     D    V++ RRA  +A
Sbjct: 251 LIAAGMADTVDRHVHVEVLRRAATQA 276