Pairwise Alignments

Query, 736 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 1247 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  322 bits (826), Expect = 6e-92
 Identities = 195/475 (41%), Positives = 271/475 (57%), Gaps = 13/475 (2%)

Query: 254  RMETGEYL--WVLVRGVAERCEQGTLRMAGSQTDISARKAAEECLRHAARHDALTGLANR 311
            R + GE    W+ +  V  R EQ          DIS+ K A+  L + A HD LTGL NR
Sbjct: 760  RRKNGELYPSWLTISAVRNR-EQLITHFVAVFADISSLKLAQARLDYQAHHDPLTGLPNR 818

Query: 312  LHLDELLKEVQQ--RPYGRAAALLFIDLDRFKLINDSLGHGAGDQVLVEVAQRLLHCLRP 369
               +  L+      +  G+  A+LF+DLDRFK INDSLGH  GD +L ++A RL   LR 
Sbjct: 819  TLFESRLQAALNGHQETGQQGAVLFLDLDRFKHINDSLGHPIGDLLLKDIAVRLKEQLRD 878

Query: 370  GDHLARFGGDEFVALLGDLACEADAERVAQRMLVALREPLQLGERTLSVSASIGIAPLQR 429
             D +AR GGDEF+ LL  L   +DA+ +A ++L     P Q GE    +SASIG +    
Sbjct: 879  IDTVARLGGDEFIILLPGLQHASDAQYLANKLLACFTPPFQAGEHEFFISASIGTSLYPE 938

Query: 430  DG-QALNVLQAADLALYRAKSAGKDQFALFCDGLHSKAARQLELESALAQALTRREFTLH 488
            DG     +++ AD A+YR+K+ G+++   +   L ++A  ++ LE  L +A+ R E +L+
Sbjct: 939  DGTDVATLVKNADAAMYRSKAKGRNRVESYTRDLTAQANERVALEHELRRAIERDELSLY 998

Query: 489  YQPICRVEQGQPYLLGVEALLRWR---FEDKPVAPMEFIPVLEESREIVRVGEWVLREAC 545
            YQP  ++      L+G EAL+RW    F D P  P  FI + EE+  I+++G+WVL +AC
Sbjct: 999  YQP--KLSLATHELIGAEALIRWHHPTFGDVP--PEHFIALAEENGMILQIGDWVLEQAC 1054

Query: 546  RQVRRWQQAGQTQLYCAVNLSIRQLQQVDFAELLARVLRETGLPPQSLLLEITETLLMHD 605
            RQ+  WQ         +VNL+  QL+       + ++L +  L P  L LEITE  +M  
Sbjct: 1055 RQMHAWQGHFDDFGPLSVNLAGAQLRHPGLLGRIKQLLHDYQLDPGRLQLEITENFIMSQ 1114

Query: 606  SEMMLNCLHEVAALGVRLALDDFGTGYCSLGYLKRYPLHVLKVDRSFIAAAPDDADSVAI 665
            +E  L+ LH++  LGV+LA+DDFGTGY SL YLKR PL  LK+D+SF+   PDD    AI
Sbjct: 1115 AEEALDVLHQLKDLGVQLAIDDFGTGYSSLSYLKRLPLDFLKIDQSFVRGLPDDPHDAAI 1174

Query: 666  SGAIIGLGQSLGLAVVAEGVERPEQIEFLVAQGCRAVQGYWFSPPRPAPELQALF 720
              AII LG S+   ++AEGVE P Q  FL A+GC  +QGY  S P P     A F
Sbjct: 1175 VRAIIALGHSMQFTIIAEGVENPAQQAFLAAEGCEQMQGYIVSLPLPPALFAATF 1229