Pairwise Alignments

Query, 736 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 733 a.a., Sensory box protein/GGDEF domain protein from Pseudomonas putida KT2440

 Score =  315 bits (807), Expect = 5e-90
 Identities = 198/494 (40%), Positives = 279/494 (56%), Gaps = 13/494 (2%)

Query: 224 VHPDDLPGLREAIAAHLNGHSPSLAHEYRVRMETGEYLWVL-VRGVAERCEQGTLRMAGS 282
           V  +DLP + +   A   G       E RVR E+ +   ++ +  +        + + G 
Sbjct: 234 VFEEDLPKVNQHFFAARAGEPQRF--EARVRDESDDKQLIMDIANLPIMVNGEIVGVFGI 291

Query: 283 QTDISARKAAEECLRHAARHDALTGLANRLHLDELLKEVQQRPYGRAA--ALLFIDLDRF 340
             DIS +K  E  L   A HD LTGL NRL L++ L +  +    R    A+++IDLD F
Sbjct: 292 ARDISKQKHYERQLSINASHDGLTGLLNRLSLEDRLVQACRSSRQRKVQLAVMYIDLDGF 351

Query: 341 KLINDSLGHGAGDQVLVEVAQRLLHCLRPGDHLARFGGDEFVALLGDLACEADAERVAQR 400
           K INDS+GH  GDQVL+EVAQRL   +RP D + R GGDEFV LL DL  + DA  VA+R
Sbjct: 352 KSINDSIGHYFGDQVLIEVAQRLTQQVRPADTVVRMGGDEFVVLLTDLLRDEDAVPVAER 411

Query: 401 MLVALREPLQLGERTLSVSASIGIAPLQRDG---QALNVLQAADLALYRAKSAGKDQFAL 457
           +L ++ +P  +    L VS SIGI     DG   Q + ++Q AD+A+Y+AK  G++ F  
Sbjct: 412 LLASIGKPYCIQGIDLHVSTSIGITV--SDGHIEQPMKLIQQADMAMYKAKQQGRNNFQW 469

Query: 458 FCDGLHSKAARQLELESALAQALTRREFTLHYQPICRVEQGQPYLLGVEALLRWRFEDKP 517
           +   L+ +      L + L +A+  + F+LHYQP  ++E     ++G+EALLRW    + 
Sbjct: 470 YTSDLNHRVCEHRSLRNDLQKAIKTQSFSLHYQP--QIEARTRRVVGIEALLRWEHPVRG 527

Query: 518 -VAPMEFIPVLEESREIVRVGEWVLREACRQVRRWQQAGQTQLYCAVNLSIRQLQQVDFA 576
            ++P  FIPV E+S +I+ +  WVL  AC Q+R     G   +  AVN+S    Q   F 
Sbjct: 528 FISPAVFIPVAEDSGQIIPLSLWVLDTACAQLRDLCDQGFNGISMAVNISPMHFQCGQFV 587

Query: 577 ELLARVLRETGLPPQSLLLEITETLLMHDSEMMLNCLHEVAALGVRLALDDFGTGYCSLG 636
           E +  VL + GL    L LEITE+LL+H+ E  +  LH +  LGVR+ALDDFGTG+ SL 
Sbjct: 588 ECIQAVLSKHGLSAGQLELEITESLLLHNVEQAIATLHRLKDLGVRIALDDFGTGFSSLS 647

Query: 637 YLKRYPLHVLKVDRSFIAAAPDDADSVAISGAIIGLGQSLGLAVVAEGVERPEQIEFLVA 696
           YLK  P+  +K+DRSFI     +    AI+  II +   L L+VVAEGVE   Q+ FL  
Sbjct: 648 YLKCLPIDKIKIDRSFIQDISTNPHDAAITQGIISMAHHLSLSVVAEGVETAPQVNFLER 707

Query: 697 QGCRAVQGYWFSPP 710
             C  +QGY+F+ P
Sbjct: 708 GRCDILQGYYFARP 721