Pairwise Alignments

Query, 736 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  341 bits (875), Expect = 1e-97
 Identities = 203/446 (45%), Positives = 273/446 (61%), Gaps = 12/446 (2%)

Query: 284  TDISARKAAEECLRHAARHDALTGLANR-LHLDELLKEVQQRPYGRA-AALLFIDLDRFK 341
            TDIS RKA+E+ +   A +DALT L NR L  D L   +QQ    +A   L+F+DLDRFK
Sbjct: 825  TDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFK 884

Query: 342  LINDSLGHGAGDQVLVEVAQRLLHCLRPGDHLARFGGDEFVALLG-----DLACEADAER 396
             INDSLGH AGD++L ++A RLL C+   D +AR GGDEF  LL      ++A    A  
Sbjct: 885  PINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNR-AIH 943

Query: 397  VAQRMLVALREPLQLGERTLSVSASIGIAPLQRDGQALN-VLQAADLALYRAKSAGKDQF 455
            VA+ +L +L  P  L  R   V+ASIGIA   +DG  L+ +++ AD A+Y AK  GK+ F
Sbjct: 944  VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003

Query: 456  ALFCDGLHSKAARQLELESALAQALTRREFTLHYQPICRVEQGQPYLLGVEALLRWRFED 515
              +   +++ A  +LELES L  A+ + EF L+YQP  +       L G EALLRWR   
Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQP--QFSGDGKRLTGAEALLRWRHPT 1061

Query: 516  KP-VAPMEFIPVLEESREIVRVGEWVLREACRQVRRWQQAGQTQLYCAVNLSIRQLQQVD 574
            +  V P +FIPV+EE   +V VG+WVLREA RQ++ W +A       +VN+S RQ     
Sbjct: 1062 RGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQFSDGQ 1121

Query: 575  FAELLARVLRETGLPPQSLLLEITETLLMHDSEMMLNCLHEVAALGVRLALDDFGTGYCS 634
                +A +L E+GLPP  L LE+TE++LM +    L  L  +  LG+ +A+DDFGTGY S
Sbjct: 1122 LGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSS 1181

Query: 635  LGYLKRYPLHVLKVDRSFIAAAPDDADSVAISGAIIGLGQSLGLAVVAEGVERPEQIEFL 694
            L YLK++P+ VLK+DR+F+   P+      I+ AII +  SL LAV+AEGVE  EQ+EFL
Sbjct: 1182 LNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFL 1241

Query: 695  VAQGCRAVQGYWFSPPRPAPELQALF 720
               GC  VQGY F  P PA + +A F
Sbjct: 1242 REHGCDEVQGYLFGRPMPAHQFEAQF 1267



 Score = 26.9 bits (58), Expect = 0.007
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 301 RHDALTGLANRLHLDELLKEVQQRPY 326
           R D+L G  +R  LDELL   Q RPY
Sbjct: 124 RADSLAGSPDRQSLDELLVLSQGRPY 149