Pairwise Alignments

Query, 1067 a.a., Type I site-specific restriction-modification system, R (restriction) subunit and related helicases from Pseudomonas stutzeri RCH2

Subject, 958 a.a., type I site-specific deoxyribonuclease, HsdR family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 54.3 bits (129), Expect = 4e-11
 Identities = 137/674 (20%), Positives = 235/674 (34%), Gaps = 152/674 (22%)

Query: 142 YNPRLDLVLFVNGIPTATLELKSEFKQSVENAKRQYRQDRPVKDPLTRKPEPLLTFKRGA 201
           Y  R D+ + +NG+P   +ELK   ++ +E  K  ++Q                  +R  
Sbjct: 114 YKNRYDVTILINGLPLVQVELK---RRGLE-LKEAFKQ-----------------IERYG 152

Query: 202 LVHFAVGQNEVAMTTKLAGKDTFFLPFNLGSAEGGAGNPMAEDDSQYATGYLW-----QR 256
           +  +  GQ              FF+  N  + +  A  P+   D Q+   + W     + 
Sbjct: 153 IHSYGTGQGLFQFIQ-------FFIISNGVNTKYYANTPIK--DRQFKQTFYWADTHNKL 203

Query: 257 LLQPDAWLKVLGRFLHLEKKTSDGFDGTPVTKETMIFPRYHQWEVVNTLINTTRAEGPGK 316
           + Q  A+  V     HL K  +         K  M+  R +Q+     +I+  R +   K
Sbjct: 204 ITQLSAFADVFMEPCHLSKMITKYVVLNESNKSLMVL-RPYQFYATEAIID--RVKTTTK 260

Query: 317 RYLIQHSAGSGKSNSIAWTAHQLASLYDEAGQRLFNSVIVITDRTVLDKQLQDTIYQFEH 376
              I H+ GSGK+ +   T+  L +L         + V+ + DR  LD Q       F  
Sbjct: 261 YGYIWHTTGSGKTLTSFKTSQILTNLPQ------VHKVVFVVDRKDLDYQTTKEFNSF-- 312

Query: 377 AQGVVKQINRETSSQSKSEQLAEALAEQTRIIIVTIQTFPALFDA---LDKYPKLASGRY 433
           ++G +   N        +  L + LA   ++I+ TIQ             K   L   R 
Sbjct: 313 SKGSIDGTN-------DTGTLVKQLAGDNKLIVTTIQKLNTAVTKKRFFHKLETLQDKRI 365

Query: 434 AVIADEAHSSQTGSSASKLKQILGSDALEGEEISAEELLDAAVQARQPNERISYYAFTAT 493
             I DE H     S   K  + + S  + G+                       + FT T
Sbjct: 366 VFIFDECHR----SQFGKTHESIKSFFVNGQ----------------------MFGFTGT 399

Query: 494 P----KAKTLELFGRPADPTLPPSASNKPEAFHLYSMRQAIEEGFILDVLRNYTTYSTAW 549
           P     A T E +G+     L        +  H Y +  AI +    +VL+    Y   +
Sbjct: 400 PIFEENAGTNE-YGKRTTTML------FQDCLHKYVITDAIRDE---NVLKFSIEYIQTF 449

Query: 550 KIAHPDGEDDEVDSKKARIKLARWVRLHPYNISQKVEVIVEHFRANIRGLLNGQAKAMVV 609
           K      +D   D     I  A  +   P  ++  V+ I+ H +   R   N +  A+  
Sbjct: 450 K-----RKDQVQDINVEAIDEAEVMEASP-RLNNIVDYIITHHK---RKTHNQRFTAIFC 500

Query: 610 TSSRQEAVRYQLALK------------AYVQQMGYNDV-----------HPLVAFSGSVL 646
             S +  +RY +  K            A +   G ND            H  ++   S+ 
Sbjct: 501 VPSVEVLIRYYVLFKKKAVEEQHDYKIATIFSYGANDELLGKDEQDNTNHFNISSRVSIA 560

Query: 647 --------------PDEVIPEEVTESSSLLNAGLNGRD----------LAHAFDTQDFNV 682
                         P E + + +++ +    +  + +D          +A     Q+ ++
Sbjct: 561 AEDAGPYGQATIKHPREFLDDFISDYNQTFGSNYSTKDSQTFYNYYQNIAKRVKNQEIDI 620

Query: 683 MIAANKYQTGFDQPKLCAMYVDKKLQGVDCVQTLSRLNRTFGDSKETFILDFFNEPQDIL 742
           ++  N + TGFD   L  +YVDK LQ    +Q  SR NR   + K    +  F   +   
Sbjct: 621 LLVVNMFLTGFDSKHLNTLYVDKNLQYHGLIQAYSRTNRILDERKSQGNIVCFRNLKKNT 680

Query: 743 DAFLPYYTKAELTD 756
           D  +  ++  E  D
Sbjct: 681 DKAIKLFSNIEAKD 694