Pairwise Alignments

Query, 385 a.a., Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain from Pseudomonas stutzeri RCH2

Subject, 514 a.a., htrA family protein from Agrobacterium fabrum C58

 Score =  264 bits (675), Expect = 4e-75
 Identities = 143/347 (41%), Positives = 214/347 (61%), Gaps = 11/347 (3%)

Query: 38  GLRQAPLVATTPQQGPYSYANAVAGAAPAVANLYTTKVIEKTEQQAP----LSKDPLFQR 93
           G   AP+ A     GP S A+       AV N+ T++ + KTE + P    L +   FQ 
Sbjct: 24  GSLSAPVAARAQSHGPESVADLAEPLLDAVVNISTSQNV-KTEGKGPVPPKLPEGSPFQE 82

Query: 94  FFNDNLPRQR----RMESSLGSAVIMSPEGYLLTNNHVTANAEQIVVALKDGRETLARVI 149
           FF D    Q+       +SLGS  ++ P GY++TNNHV   A+ I V   +G +  A ++
Sbjct: 83  FFKDYFDSQKPEGGEKVNSLGSGFVIDPAGYVVTNNHVIEGADAIEVIFPNGSKLKATLV 142

Query: 150 GSDPETDLAVLKID-LADLPAITVGHSDRIRVGDVTLAIGNPFGVGQTVTMGIISATGRN 208
           G+D +TDL+VLK++    L A+  G S  +R+GD  +A+GNPFG+G ++T+G+ISA GRN
Sbjct: 143 GTDTKTDLSVLKVEPKTPLKAVKFGDSRSMRIGDWVMAVGNPFGLGGSLTVGVISARGRN 202

Query: 209 QLGLNTYEDFIQTDAAINRGNSGGALVDAEGNLIGINTAIISESGGSQGIGFAIPVKLAL 268
            +    Y++FIQTDAAIN+GNSGG L + +G +IGINTAIIS SGGS GIGFA+P +LA 
Sbjct: 203 -INAGPYDNFIQTDAAINKGNSGGPLFNMKGEVIGINTAIISPSGGSIGIGFAVPTELAQ 261

Query: 269 EVMKSIIDHGQVIRGWLGVEVQSLTQELAESFGQEGRPGIVVAGVYRDGPAARAGLQPGD 328
            +++ +I+ G+  RGWLGV VQ +T ++A S G +   G +++GV + GP     +Q GD
Sbjct: 262 NIVQQLIEFGETRRGWLGVRVQPVTDDVAASLGMDSAKGALISGVAKGGPVENGPIQAGD 321

Query: 329 LILSIDGVQSADGRSSMNQVARARPGDKIDIDILRNGKPLTLTAEVG 375
           ++L  DG    + R  +  VA +  G ++D+ + R+GK  T+  ++G
Sbjct: 322 VVLKFDGKDINEMRDLLRIVAESPVGKEVDVVVYRDGKEETVKVKLG 368



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 285 LGVEVQSLTQELAESFG-QEGRPGIVVAGVYRDGPAARAGLQPGDLILSI 333
           LG+ +  L+ EL    G  E   G++VA V    PA + G++ GD+I+ +
Sbjct: 420 LGMNLVVLSNELRTEKGIAESVEGVLVASVDPGSPAEQKGMKAGDVIVEV 469