Pairwise Alignments

Query, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  479 bits (1233), Expect = e-139
 Identities = 259/456 (56%), Positives = 322/456 (70%), Gaps = 11/456 (2%)

Query: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
           MSF SLGL+  +  A+   GY +PTP+QQ+AIPAVL+GRDLM +AQTGTGKT GF LP+L
Sbjct: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120
           + L       + H  G +  R L+LTPTRELAAQ+ E+ + Y++ L ++S  +FGGV +N
Sbjct: 61  QHLIT----HQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN 116

Query: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180
           PQ+  +  G+DVLVA PGRLLDL +Q A+ L  +EILVLDEADRMLDMGFIHD+++VLAK
Sbjct: 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAK 176

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240
           LPAKRQNLLFSATFS DI  LA KLL NP  IEV   NT  E++ Q +  V    KR LL
Sbjct: 177 LPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELL 236

Query: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300
           + +I QG W+QVLVFTRTKHGAN LAE L K G+ +AAIHGNKSQ ART+ALADFK+  +
Sbjct: 237 SQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDI++LPHVVN+ELPNV EDYVHRIGRTGRA  +GEA+SLV  DE KL
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 361 LKGIERMTKQRIPEGDLMGFDAS-AIEAEKPEVREPRQPRPQRGEGKARGERNKPAEKGA 419
           L+ IE++ K+ IP     G++   +I+AE  +       R QRG G  RG        G 
Sbjct: 357 LRDIEKLLKKEIPRITTPGYEPDPSIKAEPIQ-----NGRQQRGGGGGRGRGQNQGGAGR 411

Query: 420 EQKERNRRSQSKSRKPARDSASGE-AQVVARPPQLP 454
            Q+ R + S +   KP   +  G+ A   ARPP+ P
Sbjct: 412 SQQPRRQDSGAAKAKPKPRTGEGKTAGDKARPPRRP 447