Pairwise Alignments

Query, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  311 bits (796), Expect = 3e-89
 Identities = 178/387 (45%), Positives = 249/387 (64%), Gaps = 25/387 (6%)

Query: 9   ALMSILAMAVFLAGCQEEAAPPAQQKP-KVGIVTLQAEPFAVTTELPGRTRAYRIAEVRP 67
           ALM++L+++  LAGC + A P  Q    +V + TLQ +P A+++EL GR  A R AEVR 
Sbjct: 13  ALMALLSLS--LAGCSDSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEVRA 70

Query: 68  QVNGIIQKRLFTEGSDVKAGQQLYQIDASVYEATLKSAQASVASSKSLA-------DRYA 120
           +V G++ KR++ EGSDVK G  L+ ID + ++A   SA+A++A +++          RY 
Sbjct: 71  RVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQRYR 130

Query: 121 ELVKDQAVSKQAYDEARAASLQAEAE-------LERARIDVRYTKVLAPISGRVGRSAVT 173
           ELV D+AVS+Q YD A+A+ LQA+AE       LERAR+++ Y  V APISGR+GR+ VT
Sbjct: 131 ELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQVT 190

Query: 174 EGALVSNGQAQELATIQQLDPIYVDVTQPARDLLALRRDLAEGRLQKSGDNAAKVTLKLE 233
           EGALV   +   LATIQQLDPI+ DVTQ  R+L ALRR L  G LQ+ GD  A+ TL  +
Sbjct: 191 EGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARATLIQD 250

Query: 234 DGSDYAHEGKLEFSEVTVDAGTGSVTLRAVFPNPDKDLLPGMFVHAQLVAGMKSEAILVP 293
           DGS Y   GKL FS+++VD  T  +TLR+ FPNPD DLLPG +V  +L   ++ + + VP
Sbjct: 251 DGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLSVP 310

Query: 294 QQGVTRNTKGDPTAMVVNAESKVEVRPIKTERAVGNRWLVGEGLQPGDRVITEGLQFIQP 353
           Q+ + R++ G P  +VV+  ++V  R +    A G+RW+V EGL  G+RV+ EGLQ ++ 
Sbjct: 311 QRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHVKA 370

Query: 354 GVEVEAVPATNVDNRGGVP--AQPQGQ 378
           G +V+      VDN    P  AQ  GQ
Sbjct: 371 GDQVQ------VDNTPAAPPIAQHTGQ 391