Pairwise Alignments

Query, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  258 bits (660), Expect = 1e-73
 Identities = 155/360 (43%), Positives = 216/360 (60%), Gaps = 21/360 (5%)

Query: 14  LAMAVFLAGCQEEAAPP--AQQKPKVGIVTLQAEPFAVTTELPGRTRAYRIAEVRPQVNG 71
           LAMA+ LAGC+  A     A     V IVTL  E  A+  ELPGR    R+AEVR +V G
Sbjct: 13  LAMAIALAGCEPAAEQDGAANASYPVEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPG 72

Query: 72  IIQKRLFTEGSDVKAGQQLYQIDASVYEATLKSAQASVASSKSLAD-------RYAELVK 124
           I+  + F EG+DVKAG  L+QID + ++A L  A+A +A ++++         RY  LVK
Sbjct: 73  IVLHKRFEEGADVKAGDVLFQIDPAPFKAALARAEADLARAQAVQQEAQARVKRYEPLVK 132

Query: 125 DQAVSKQAYDEARA-------ASLQAEAELERARIDVRYTKVLAPISGRVGRSAVTEGAL 177
            +AVS+Q +D A A       A   A+A+++ AR+++ Y  V APISGR+GR+  TEGAL
Sbjct: 133 IEAVSQQDFDSATAELRSAGAAVRSAQADVQAARLNLGYATVTAPISGRIGRALATEGAL 192

Query: 178 VSNGQAQELATIQQLDPIYVDVTQPARDLLALRRDLAEGRLQKSGDNAAKVTLKLEDGSD 237
           V  G+A  +A IQQLDPIY+D TQ A D L LR+ L +G L     ++ ++T ++E G+D
Sbjct: 193 VGQGEATLMARIQQLDPIYIDFTQSAADALRLRQALKDGALSA---DSQRLTAQVE-GTD 248

Query: 238 YAHEGKLEFSEVTVDAGTGSVTLRAVFPNPDKDLLPGMFVHAQLVAGMKSEAILVPQQGV 297
           +   G+L F++V+VD GTG V LR  F N D  LLPGM+V  +   G  + AILVPQ+ V
Sbjct: 249 FQRSGELMFTDVSVDRGTGQVILRGRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAV 308

Query: 298 TRNTKGDPTAMVVNAESKVEVRPIKTERAVGNRWLVGEGLQPGDRVITEGLQFIQPGVEV 357
            R + G    +V       E R ++T    G+RW + EGL+PGD+VI      + PG+ V
Sbjct: 309 QRGSDGQARVLVA-TNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGSPAGLAPGMPV 367