Pairwise Alignments

Query, 238 a.a., RNA methyltransferase, RsmE family from Pseudomonas stutzeri RCH2

Subject, 244 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Rhodanobacter sp. FW510-T8

 Score =  186 bits (472), Expect = 4e-52
 Identities = 107/243 (44%), Positives = 147/243 (60%), Gaps = 6/243 (2%)

Query: 1   MRLSRFFIDAPLSLG-QHPLPEASAHYIGRVLRLTAGSAVQLFDGSGDEFRGELLEVGKK 59
           MR  R  +D PL+ G +  LP  +  ++ RVLR+ AG  + LF+G G+++   +L VGK+
Sbjct: 1   MRNIRIHVDLPLAAGAERILPAQAGEHVARVLRMAAGDPLTLFNGDGNDYPATILAVGKR 60

Query: 60  TVTVELHEHLKGMPESALQIHLGQGLSRGERMDWAIQKATELGVAQITPIISERCEVRLN 119
            V V +        ES L + L QG++RGE+MD  +QKATELGV +I P+++ER EV+L+
Sbjct: 61  EVVVRVDGCHALANESPLPLTLAQGVARGEKMDLIVQKATELGVTRIVPLLTERAEVKLD 120

Query: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVSLRDW---LAVEAELKLVLHPIAEPL 176
             RA+KRLAHWR +A SACEQ GR+ LP I   + L  W   LA +  L+L L P A   
Sbjct: 121 AARAEKRLAHWRAVAASACEQSGRARLPEIVQALPLPAWLNGLAADGALRLALLPEAGRS 180

Query: 177 ASHAKPRTLA--FLIGPEGGLSENEVEQAAVQGFLPARLGPRVLRTETAPVVALSVAQQL 234
           +   +        ++GPEGGL E +    A  GF   RLGPR+LRTETA + AL+  Q L
Sbjct: 181 SRELRFGAAGGLLVVGPEGGLGERDAGALAAAGFEGLRLGPRILRTETAGLAALAALQAL 240

Query: 235 WGD 237
            GD
Sbjct: 241 HGD 243