Pairwise Alignments

Query, 238 a.a., RNA methyltransferase, RsmE family from Pseudomonas stutzeri RCH2

Subject, 244 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Pectobacterium carotovorum WPP14

 Score =  195 bits (496), Expect = 6e-55
 Identities = 108/243 (44%), Positives = 157/243 (64%), Gaps = 7/243 (2%)

Query: 1   MRLSRFFIDAPLSL--GQHPLPEASAHYIGRVLRLTAGSAVQLFDGSGDEFRGELLEVGK 58
           MR+ R F    LSL  G+  L + +A+++GRVLR+T G ++QLFDGS   F  E++  GK
Sbjct: 1   MRVPRIFHPETLSLNGGEAELSDDAANHVGRVLRMTTGQSLQLFDGSNHVFDAEIIAAGK 60

Query: 59  KTVTVELHEHLKGMPESALQIHLGQGLSRGERMDWAIQKATELGVAQITPIISERCEVRL 118
           K+V V          ES L +HLGQ +SRGE+M++ IQK+ ELGV  ITP++SERC V+L
Sbjct: 61  KSVRVRFTAGKLEDKESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSERCGVKL 120

Query: 119 NDERADKRLAHWRQIAISACEQCGRSVLPIIHAPVSLRDWLAVEAE-LKLVLHPIAEPLA 177
           + ER +K+++ W++IA++ACEQ GR+ +P++   ++L  W A + + LKL LHP A   +
Sbjct: 121 DAERMEKKISQWQKIAVAACEQSGRNCVPLVRPAMTLEAWCAEQDDALKLNLHPRATQ-S 179

Query: 178 SHAKPRTLA---FLIGPEGGLSENEVEQAAVQGFLPARLGPRVLRTETAPVVALSVAQQL 234
            +  P  +A    LIGPEGGL+  E+   +  GF    LGPRVLRTET  + A++  Q  
Sbjct: 180 INTLPLPVARVRLLIGPEGGLTAGEITMTSEHGFTDILLGPRVLRTETTALTAMTALQVR 239

Query: 235 WGD 237
           +GD
Sbjct: 240 FGD 242