Pairwise Alignments
Query, 2408 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2
Subject, 2031 a.a., hybrid sensor histidine kinase/response regulator from Ralstonia solanacearum PSI07
Score = 573 bits (1477), Expect = e-166
Identities = 487/1569 (31%), Positives = 723/1569 (46%), Gaps = 171/1569 (10%)
Query: 973 TNLIQMDLAEAELLHEAELLLRKGLTNLD-HEPLAPIEGAAEFLLKVHTLHQARLVEAGA 1031
T+ I A E + + L T+LD E G + ++ Q GA
Sbjct: 487 TDEITQRRARGEQVRALQTQLASAETHLDAFEREGDASGGLKEASRLFAEMQGTFASLGA 546
Query: 1032 RQHNDAGETRDPNMIALFLSEGMDILLDAEDLLRSWREHPAERQELSALLQELTTLGQGA 1091
+ A E + AL + G D E L + + + Q L T L GA
Sbjct: 547 SEAVRATEAAQSTIAALE-APGQHAAADREHYLAALASNVSGLQGFLDALSAGTEL-TGA 604
Query: 1092 KMADLPQMEALCQV----LLRLYAVVEEGRLAVSERFFDDVEQGHEA---------LVGM 1138
++ + L V R +A E + V D++ G +A L +
Sbjct: 605 QIDQIVIEGVLTSVERESAWRAFAFDAETGMLVRRESQVDLDAGADAAQADADVSHLQSL 664
Query: 1139 MDQVAAALQVSEQSELVARLEALLAEAIDPLSLEQPFERSVEPDQVAVAIEAPLTLLPAE 1198
+D++ A V L L A L EA D +++ R ++ +A A
Sbjct: 665 LDRLLAKHPVDLADPLAVELRAALQEARDAAAIDDDPARRRRLEEALAQFDA----WQAG 720
Query: 1199 AEAEAEAEAEAEAEAEAEAEAWPMEDAPADEAQDELDHEMVEIFLDEAVDLM-------- 1250
++A E A AEA A +AQ +D E++EIFL EA +++
Sbjct: 721 SQAALERMQAALVAPAAEAAVVAAHPPVASDAQS-IDAELLEIFLSEADEVLAGVRTDLQ 779
Query: 1251 --ESAGHALDRWLADPANQMALSALLRDLHTLKGGARMAAIRPIGDLAHELESLYEGLSD 1308
+A A A + L+ L R HTLKG RM + G+ A +E +
Sbjct: 780 ALHAAAQAGSGGAATGTDLDLLTQLRRAFHTLKGSGRMVGLTRYGEAAWAIEQVMNVWLA 839
Query: 1309 GRYVHSQELATLLQRSH----------------DH----LALQLEQLQRETPMSCADALI 1348
V + +LA LL+R+ DH L ++++ P +A+
Sbjct: 840 ESRVPTPDLAALLKRAEADLSAWTAAIAQAPHADHAIEPLVAAADRVRHGGPFVWLEAVA 899
Query: 1349 ESM--QAFRQGVLPVFESVEEDDASQP-LPVDDPILNEELLTIEYQADQPQDEPLS--SD 1403
++ QA P A +P L V +P+ + + +A EP + +D
Sbjct: 900 DTPAPQASEAPAEPAVSLEPVAPAPEPRLHVLEPVATLAEVPVAPEAPLAPVEPAAQAND 959
Query: 1404 SLDISLVEI----EDDLPEAQE---KAVAE---EINAVDVPLAEDLDEIEFSLPGVEETP 1453
+ +S ++ E + P A+E +AVAE E + PLAE + E P E P
Sbjct: 960 AASLSWDDVPALPEVETPAAEEPIAEAVAEPEPEPEPISEPLAEPVIEPVAEAPAAEPAP 1019
Query: 1454 ASFD-------------------DISSPVQNDVERDPELVEIFLEEGFDLIESAAGGLQR 1494
A D D V L ++L+E LI
Sbjct: 1020 AEADAKVIPFPFEQTGALEEASHDDGIKAIGPVHISVALYNVYLQEADALIRRLGVDFSE 1079
Query: 1495 WMADVDNSFELEALQRDLHTLKGGARMADIREIGDLSHELEFLYEGLCAGNYRASPELFG 1554
W + + E R HTL+G + + + + ++ LE + L + P F
Sbjct: 1080 WRHE-GRAQPGELALRGAHTLQGSSAVVGLEPVRLIADGLEQVLLNLDSHPVAMHPGDFR 1138
Query: 1555 LLQACQDRLAEMLEAVRAHQPVPSGEALIETI----RRFRNNPEEQLSIPS-------SV 1603
LL +R+ ML A + +AL ++ R P QL S +V
Sbjct: 1139 LLDQAVERMRGMLHQFAASVWPDADDALCRSLAELCERVLVRPRLQLESASQEFAGVETV 1198
Query: 1604 SLKAAQDDAQQSAEAE----------------------------------ILDIFVEEAD 1629
L A +D EA +L+IF+EEA
Sbjct: 1199 ELPTASEDVAPEIEAPEAIVPIAPVYEAPVAGPAVAELVRQAPSDALDPALLEIFLEEAH 1258
Query: 1630 DLLEEMESALGRWDAGREDAAPLADMLRVLHTLKGGARLAGQTDLGNMAHDLEQMLGEAQ 1689
L E+ L W+A +D +LR LHT+KG AR+AG LG AH++E +
Sbjct: 1259 VALPELGQQLREWEAAPQDRTVSGLLLRNLHTVKGSARMAGAMTLGQAAHEMESAVDNGL 1318
Query: 1690 QQGAPWPDSLFLDVQQGYDALLKDVEQLRAN--LASDGETRSDSSEASQPEAQDLEPQLP 1747
+ D+LF + D + V+ L A L D R D+++A D
Sbjct: 1319 RHNR-MDDALFRKLYVWLDRIQAHVDALGAGKLLPLDAGVR-DAADAPSAAGGD------ 1370
Query: 1748 SEPLMLAQPIVAASTQPAPSSSPAKVLPFIRRAQLAAQEAAARRAPQELVKVPAELLEGL 1807
P A + PA + + L R + A EAA R+ + +V+V A L+ L
Sbjct: 1371 --------PASAGAMLPAVAGATNVGLTGARSPEAEALEAAERQ--RAMVRVQARALDAL 1420
Query: 1808 VNLAGETSIFRGRVEQQVSDVGFTLGEMEATIERVRDQLRRLDTETQAQILSRYQAEAER 1867
+N AGE R R+E +V + L E+ + R+R Q+R ++ + ++Q+ SR A
Sbjct: 1421 INDAGEVGAARARLESEVQALKSYLSELNDNVARLRAQVREIEIQAESQMESRIADAAAH 1480
Query: 1868 AGYDDFDPLEMDRHSQLQQLSRALFESASDLLDLKETLAARNRDAETLLLQQARVNTELQ 1927
A FDPLE DR ++LQ+L+R + ES +D+ +++ L A L QAR+ LQ
Sbjct: 1481 AA--TFDPLEFDRFTRLQELTRMMAESVNDVATVQQNLFRGFDQASLDLETQARLTRGLQ 1538
Query: 1928 EGLMRTRMVPFERLVPRLRRIVRQVAGELGKQVEFMVGNATGEMDRSVLERIVAPLEHML 1987
LMR RMV F+ + RL R+ RQ A E GK+V + T E+DRSVL+R+ PLEHM+
Sbjct: 1539 RSLMRARMVQFDTVADRLYRVARQAAAETGKEVRLFIKGGTVELDRSVLDRMGGPLEHMI 1598
Query: 1988 RNAVDHGIESVERRRAVGKPEQGTIRLDLAREGGDIVLTLADDGAGINLDAVRRKAIERG 2047
RNAV HGIE E RR GK G + L++ +EG ++VL DDGAG+NL+ +R +A+ER
Sbjct: 1599 RNAVAHGIELAEERRTKGKSPAGELTLEVQQEGNEVVLHFVDDGAGLNLERIRARALERQ 1658
Query: 2048 LMVADSDLSEHEILQFILEAGFSTAERVTQISGRGVGMDVVHSEVKQLGGSMTIESTLGQ 2107
L+ D + SE + + I GFSTA++V++++GRGVGMDVV +E LGG +++++T G
Sbjct: 1659 LLAPDEEASEARLTEMIFTPGFSTAQQVSELAGRGVGMDVVRAETVALGGRISLQTTPGA 1718
Query: 2108 GTRFLIRLPFTVSVNRALMVYSGEDLYAIPLNTIEGIVRVSPYEL-EAYYQPDAPRFEYA 2166
GTRF I LP T ++ + L+V GE +YAIP I+ + ++ P L EAY +A E
Sbjct: 1719 GTRFTIHLPLTTAITQVLLVRVGERVYAIPSGMIDHVQQLRPQSLAEAY---NAAALELP 1775
Query: 2167 GQAYELRYLGDLLNNGQKPKLVGQSLPLPVILVRSKEHSVAVQVDSLAGSREIVVKSLGP 2226
G Y G LL +P + G+ P ++VRS AV VD + G+RE+VVK +GP
Sbjct: 1776 GGPVPFHYFGALLEEA-RPVMGGRKYS-PAVVVRSGAERAAVHVDEVIGNREVVVKHIGP 1833
Query: 2227 QFAGVHGISGATILGDGRVVVILD--LLATIRVLHAYQLTQLQQPR---------LFDQT 2275
A + GI+GAT LGDG +V+I + +L A L QLQ + L + +
Sbjct: 1834 HLARLEGIAGATTLGDGEIVLIYNPVVLTQRFEREAAALGQLQAEQGTKGAVAELLRNGS 1893
Query: 2276 HEPVEVESERPTLVMVVDDSVTVRKVTSRLLERNGMNVLTAKDGVDAITQLQERKPDIML 2335
+ V + +P +VMVVDDS+TVRKVT RLL R+G + A+DGVDA+ QLQE PD ML
Sbjct: 1894 IDAVPGLATQP-IVMVVDDSLTVRKVTQRLLTRSGYQAVLARDGVDALRQLQEVTPDAML 1952
Query: 2336 LDIEMPRMDGFEVATLVRHDERLKDLPIVMITSRTGEKHRDRALSIGVNEYLGKPYQESV 2395
+DIEMP MDGF++ VR DER+ +PI+MITSR+ +KHR A IGVN YLGKPY E
Sbjct: 1953 VDIEMPHMDGFDLTRNVRADERIGAMPIIMITSRSADKHRRYAAEIGVNVYLGKPYNEDE 2012
Query: 2396 LLEAIQRLV 2404
LL ++ L+
Sbjct: 2013 LLRHLRNLI 2021
Score = 142 bits (358), Expect = 6e-37
Identities = 173/634 (27%), Positives = 262/634 (41%), Gaps = 69/634 (10%)
Query: 711 SLEQVMAAPVAAINPPAQDVPPSLLPP-PDDEEPVDEDLLEVFIEEAAEVLETIGEQLPR 769
+LE++ AA VA P A+ + PP D + +D +LLE+F+ EA EVL + L
Sbjct: 724 ALERMQAALVA---PAAEAAVVAAHPPVASDAQSIDAELLEIFLSEADEVLAGVRTDLQA 780
Query: 770 WFADTE----------DKEALGEVRRAFHTLKGSGRMVRALIIGELAWSIENLLNRVLDR 819
A + D + L ++RRAFHTLKGSGRMV GE AW+IE ++N L
Sbjct: 781 LHAAAQAGSGGAATGTDLDLLTQLRRAFHTLKGSGRMVGLTRYGEAAWAIEQVMNVWLAE 840
Query: 820 SIQVTDPVKQVVTGVIALMPALVDEFAAKAQRQRDD--VDQLAAAAHALAKGQPAMLSQP 877
S T + ++ A + A AA AQ D ++ L AAA + G P + +
Sbjct: 841 SRVPTPDLAALLKRAEADLSAWT---AAIAQAPHADHAIEPLVAAADRVRHGGPFVWLEA 897
Query: 878 AVMPATPAEDSSPETFSADDDALDPQLLEIFRNEAEAHLTTLVSFLADCAQRLPQPVTDA 937
P +P + + + P E H+ V+ LA+ P+
Sbjct: 898 VADTPAPQASEAPAEPAVSLEPVAPA------PEPRLHVLEPVATLAEVPVAPEAPLAPV 951
Query: 938 LQRALHTLKGSAHMAGILPVAEIATPLEKMAKEFKTNLIQMDLAEAELLHE--AELLLRK 995
A S + + E+ TP A+E + E E + E AE ++
Sbjct: 952 EPAAQANDAASLSWDDVPALPEVETPA---AEEPIAEAVAEPEPEPEPISEPLAEPVIEP 1008
Query: 996 GLTNLDHEPLAPIEGAAEFLLKVHTLHQARLVEAGARQHNDAGETRDPNMIALFLSEGMD 1055
EP AP E A+ + Q +E + H+D + P I++ L
Sbjct: 1009 VAEAPAAEP-APAEADAKVI--PFPFEQTGALEEAS--HDDGIKAIGPVHISVALYNVY- 1062
Query: 1056 ILLDAEDLLR-------SWREHPAERQELSALLQELTTLGQGAKMADLPQMEALCQVLLR 1108
L +A+ L+R WR H Q L+ TL + + L + + L +
Sbjct: 1063 -LQEADALIRRLGVDFSEWR-HEGRAQPGELALRGAHTLQGSSAVVGLEPVRLIADGLEQ 1120
Query: 1109 LYAVVEEGRLAVSERFFDDVEQGHEALVGMMDQVAAALQVSEQSELVARLEALLAEAI-- 1166
+ ++ +A+ F ++Q E + GM+ Q AA++ L L L +
Sbjct: 1121 VLLNLDSHPVAMHPGDFRLLDQAVERMRGMLHQFAASVWPDADDALCRSLAELCERVLVR 1180
Query: 1167 DPLSLE---------QPFERSVEPDQVAVAIEAPLTLLPAEAEAEAEAEAEAEAEAEAEA 1217
L LE + E + VA IEAP ++P EA A AE +A
Sbjct: 1181 PRLQLESASQEFAGVETVELPTASEDVAPEIEAPEAIVPIAPVYEAPVAGPAVAELVRQA 1240
Query: 1218 EAWPMEDAPADEAQDELDHEMVEIFLDEAVDLMESAGHALDRWLADPANQMALSALLRDL 1277
+ D LD ++EIFL+EA + G L W A P ++ LLR+L
Sbjct: 1241 PS------------DALDPALLEIFLEEAHVALPELGQQLREWEAAPQDRTVSGLLLRNL 1288
Query: 1278 HTLKGGARMAAIRPIGDLAHELESLYE-GLSDGR 1310
HT+KG ARMA +G AHE+ES + GL R
Sbjct: 1289 HTVKGSARMAGAMTLGQAAHEMESAVDNGLRHNR 1322
Score = 72.4 bits (176), Expect = 7e-16
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 10/193 (5%)
Query: 690 VTLPEYCEAEPSSVAKPEPALSLEQVMAAPVAAINPPAQDVPPSLLPPPDDEEPVDEDLL 749
V LP E + PE + + V APVA PA V + P D +D LL
Sbjct: 1198 VELPTASEDVAPEIEAPEAIVPIAPVYEAPVAG---PA--VAELVRQAPSD--ALDPALL 1250
Query: 750 EVFIEEAAEVLETIGEQLPRWFADTEDKEALGEVRRAFHTLKGSGRMVRALIIGELAWSI 809
E+F+EEA L +G+QL W A +D+ G + R HT+KGS RM A+ +G+ A +
Sbjct: 1251 EIFLEEAHVALPELGQQLREWEAAPQDRTVSGLLLRNLHTVKGSARMAGAMTLGQAAHEM 1310
Query: 810 ENLLNRVLDRSIQVTDPVKQVVTGVIALMPALVDEFAAKAQRQRDDVDQLAAAAHALAKG 869
E+ ++ L R ++ D + + + + + A VD A D + AA A + A G
Sbjct: 1311 ESAVDNGL-RHNRMDDALFRKLYVWLDRIQAHVDALGAGKLLPLDAGVRDAADAPSAAGG 1369
Query: 870 QPAMLSQPAVMPA 882
PA S A++PA
Sbjct: 1370 DPA--SAGAMLPA 1380
Score = 69.7 bits (169), Expect = 5e-15
Identities = 86/343 (25%), Positives = 139/343 (40%), Gaps = 66/343 (19%)
Query: 687 LPDVTLPEYCEAEPSSVAKPEP-----ALSLEQVMAAPVA---AINPPAQDVPPSLLPPP 738
LP+V P E +VA+PEP + L + + PVA A P + ++P P
Sbjct: 971 LPEVETPAAEEPIAEAVAEPEPEPEPISEPLAEPVIEPVAEAPAAEPAPAEADAKVIPFP 1030
Query: 739 DD-----EEPVDED-------------LLEVFIEEAAEVLETIGEQLPRWFADTEDKEAL 780
+ EE +D L V+++EA ++ +G W E +
Sbjct: 1031 FEQTGALEEASHDDGIKAIGPVHISVALYNVYLQEADALIRRLGVDFSEW--RHEGRAQP 1088
Query: 781 GEVR-RAFHTLKGSGRMVRALIIGELAWSIENLLNRVLDRSIQVTDPVKQVVTGVIALMP 839
GE+ R HTL+GS +V + +A +E +L + + + +++ + M
Sbjct: 1089 GELALRGAHTLQGSSAVVGLEPVRLIADGLEQVLLNLDSHPVAMHPGDFRLLDQAVERMR 1148
Query: 840 ALVDEFAAKAQRQRDDV-----------------DQLAAAAHALAKGQ------------ 870
++ +FAA DD QL +A+ A +
Sbjct: 1149 GMLHQFAASVWPDADDALCRSLAELCERVLVRPRLQLESASQEFAGVETVELPTASEDVA 1208
Query: 871 PAMLSQPAVMPATPAEDS-------SPETFSADDDALDPQLLEIFRNEAEAHLTTLVSFL 923
P + + A++P P ++ + A DALDP LLEIF EA L L L
Sbjct: 1209 PEIEAPEAIVPIAPVYEAPVAGPAVAELVRQAPSDALDPALLEIFLEEAHVALPELGQQL 1268
Query: 924 ADC-AQRLPQPVTDALQRALHTLKGSAHMAGILPVAEIATPLE 965
+ A + V+ L R LHT+KGSA MAG + + + A +E
Sbjct: 1269 REWEAAPQDRTVSGLLLRNLHTVKGSARMAGAMTLGQAAHEME 1311
Score = 31.2 bits (69), Expect = 0.002
Identities = 64/282 (22%), Positives = 103/282 (36%), Gaps = 37/282 (13%)
Query: 3 DRHDYVALEWVKGEIAETLKQARQALEAFVENPQDPTRMRFCLTYVHQVHGTLQMVEFFG 62
D D LE E L + Q L + PQD T L +H V G+ +M G
Sbjct: 1243 DALDPALLEIFLEEAHVALPELGQQLREWEAAPQDRTVSGLLLRNLHTVKGSARMA---G 1299
Query: 63 AALLAEEMEQLARALLEG-RVTNQGEALEVMMQAILQLPVYLDRIQSARRDLPM-VVLPL 120
A L + ++ A+ G R +AL +L V+LDRIQ+ L +LPL
Sbjct: 1300 AMTLGQAAHEMESAVDNGLRHNRMDDAL------FRKLYVWLDRIQAHVDALGAGKLLPL 1353
Query: 121 LNDLR---------------------AARGEKLLSETSLFSPDLSGRAPALPQESVERLR 159
+R A G + T SP+ A Q ++ R++
Sbjct: 1354 DAGVRDAADAPSAAGGDPASAGAMLPAVAGATNVGLTGARSPEAEALEAAERQRAMVRVQ 1413
Query: 160 TNELPALLRKLRQMLQVALVGVIRNQDMPTNLGYMARVFARLEVLCKDAPLEALWQIASG 219
L AL+ ++ Q + + L + ARL ++ ++A Q+ S
Sbjct: 1414 ARALDALINDAGEVGAARARLESEVQALKSYLSELNDNVARLRAQVREIEIQAESQMESR 1473
Query: 220 MVEGLASGEVSHGTSVRTLLRQVDKQLKRLVEEGADGLNQAA 261
+ + A H + L +L+ L A+ +N A
Sbjct: 1474 IADAAA-----HAATFDPLEFDRFTRLQELTRMMAESVNDVA 1510
Score = 30.0 bits (66), Expect = 0.004
Identities = 94/374 (25%), Positives = 144/374 (38%), Gaps = 50/374 (13%)
Query: 918 TLVSFLADCAQRLPQPVTDALQRALHTLKGSAHMAGIL--PVAEIATPLEKMAKEFKTNL 975
TL + C Q PVT A ALHT A ++ + + LE ++++
Sbjct: 329 TLGPDIIACVQAFSIPVTHAPAGALHTRHYYALLSAETTDTLQRVGRTLETLSQQPAPAA 388
Query: 976 IQMDLAEAELLHEAELL---LRKGLTNLDHEPL-APIEGAAEFLLKVHTLHQARLVEAGA 1031
+ D A L A+ L LTN EP P + A LL + +R++
Sbjct: 389 DEFDAALQTLALHADALGQPALSALTNRLGEPADVPYDDVAPTLLFL-----SRMLARPW 443
Query: 1032 RQHNDAGETRDPNMIALFLSEGMDILLDAEDLLRSWREHPAERQELSALLQELT-TLGQG 1090
H ++G+ R + + + + L + R+ PA LS L E+T +G
Sbjct: 444 ALHGESGDLR-----SAWFAARCNELAEHARAQRAGEGAPAPIW-LSRLTDEITQRRARG 497
Query: 1091 AKMADLPQMEALCQVLLRLYAVVEE--GRLAVSERFFDDVEQGHEALVGMMDQV------ 1142
++ L A + L + + G L + R F ++ QG A +G + V
Sbjct: 498 EQVRALQTQLASAETHLDAFEREGDASGGLKEASRLFAEM-QGTFASLGASEAVRATEAA 556
Query: 1143 ---AAALQVSEQSELVARLEALLAEA---------IDPLSLEQPFERSVEPDQVAVAIEA 1190
AAL+ Q R L A A +D LS + DQ + IE
Sbjct: 557 QSTIAALEAPGQHAAADREHYLAALASNVSGLQGFLDALSAGTEL-TGAQIDQ--IVIEG 613
Query: 1191 PLTLLPAEAEAEAEAEAEAEAEAEAEAEAWPMEDAPADEAQDELDHEMVEIFLDEAVDLM 1250
LT + E+ A A +AE E+ DA AD AQ + D ++ LD +
Sbjct: 614 VLTSVERESAWRAFA-FDAETGMLVRRESQVDLDAGADAAQADADVSHLQSLLDRLL--- 669
Query: 1251 ESAGHALDRWLADP 1264
A H +D LADP
Sbjct: 670 --AKHPVD--LADP 679