Pairwise Alignments
Query, 2408 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2
Subject, 732 a.a., Signal transduction histidine kinase CheA from Pseudomonas sp. S08-1
Score = 288 bits (736), Expect = 3e-81
Identities = 226/790 (28%), Positives = 376/790 (47%), Gaps = 82/790 (10%)
Query: 1624 FVEEADDLLEEMESALGRWDAGREDAAPLADMLRVLHTLKGGARLAGQTDLGNMAHDLEQ 1683
F EA + L + L W G + + R +H++KG +R AG ++ + H E
Sbjct: 16 FRAEAAERLAILADTLANWREGGTSEQGIESLFREVHSIKGASRAAGIGEIERICHAWES 75
Query: 1684 MLGEAQQQGAPW-PDSLFLDVQQGYDALLKDVEQLRANLASDGETRSDSSEASQPEAQDL 1742
+LG + P+ + L LK V++L A DG + ++
Sbjct: 76 LLGAVRHADIELTPERVEL-----CRLALKLVQRLHAGQEVDGYELAQMIDSLNDSTLGQ 130
Query: 1743 EPQLPSEPLMLAQPIVAASTQPAPSSSPAKVLPFIRRAQLAAQEAAARRAPQELVKVPAE 1802
E +LP ++ PI P A R L
Sbjct: 131 EVELP----VVEAPIAELPQDPT------------------TVRVATERLDALLFHSEVL 168
Query: 1803 LLEGLVNLAGETSIFRGRVEQQVSDVGFTLGEMEATIERVRDQLRRLDTETQAQILSRYQ 1862
L L A S+ + + LG ++++R+ L L + Q + S
Sbjct: 169 LQHKLEAQAHARSLQEHALAFEPQRTKRMLGS--GALKQLRENLDELPSSAQDGLKSVLD 226
Query: 1863 AEAERAGYDDFDPLEMDR-HSQLQQLSRALFESASDLLDLKETLAARNRDAETLLLQQAR 1921
Y D+ ++DR H +L+++ + A L L E+L + A LLL
Sbjct: 227 -------YLDWSLSQLDRLHFGAARLAKSGTQMALGLAQLSESLIGEMQGA--LLLS--- 274
Query: 1922 VNTELQEGLMRTRMVPFERLVPRLRRIVRQVAGELGKQVEFMVGNATGEMDRSVLERIVA 1981
+ L EG+ +V+ +A + GK+ E V + ++D+ +L+ +
Sbjct: 275 -GSSLLEGVSA---------------MVQDIASQAGKRAELQVRGESLQIDKRILDELRI 318
Query: 1982 PLEHMLRNAVDHGIESVERRRAVGKPEQGTIRLDLAREGGD-IVLTLADDGAGINLDAVR 2040
L H+LRNA+DHG+E+ E+R + GK G + ++L +E D L ++DDGAGI+ ++
Sbjct: 319 VLTHLLRNAIDHGLETPEQRTSQGKNPVGKLLVELVQESADRFELRVSDDGAGIDPAGLK 378
Query: 2041 RKAIERGLMVADSD--LSEHEILQFILEAGFSTAERVTQISGRGVGMDVVHSEVKQLGGS 2098
KA+ GL+ A+ L E E L I +G ST+ +T ISGRG+GM +V V++LGG
Sbjct: 379 AKALAAGLLGAEQAQALGEREALGLIFLSGLSTSGMITDISGRGLGMPIVQDTVERLGGR 438
Query: 2099 MTIESTLGQGTRFLIRLPFTVSVNRALMVYSGEDLYAIPLNTIEGIVRVSPYELEAYYQP 2158
+ ++ST G GT F + LP ++S RA++V + E ++A+P +E +R+ +
Sbjct: 439 IELDSTRGSGTSFHLHLPLSLSTFRAVIVRNAERVFAVPALAVERCLRLPASAIRTL--E 496
Query: 2159 DAPRFEYAGQAYELRYLGDLLNNGQKPKLVGQSLPLPVILVRSKEHSVAVQVDSLAGSRE 2218
+ P + G+ L L D+L Q P + + L ++L++ + + V+ L G +E
Sbjct: 497 NRPSVAFEGEVLPLWPLADVLGLAQPPIIASE---LTLLLLKVRGERFVLLVEELLGDQE 553
Query: 2219 IVVKSLGPQFAGVHGISGATILGDGRVVVIL---DLLATIRVLHAYQLTQLQQPRLFDQT 2275
I+VK+LG Q V + GAT+LGDG++V IL DL + L+Q QPR
Sbjct: 554 IIVKNLGRQLQRVRNLMGATVLGDGQLVPILHPADLYRSALESQDSSLSQQAQPR----- 608
Query: 2276 HEPVEVESERPTLVMVVDDSVTVRKVTSRLLERNGMNVLTAKDGVDAITQLQERKPDIML 2335
SE +++ +DS T R + +LE G V TA DG++A L++ + D+++
Sbjct: 609 ------RSEVVKRLLIAEDSFTSRGLLKAILEAAGYRVTTANDGLEAWNALKQGQFDLLV 662
Query: 2336 LDIEMPRMDGFEVATLVRHDERLKDLPIVMITSRTGEKHRDRALSIGVNEYLGKP-YQES 2394
D+EMPR+DGF + + +R D L DLP+V++T+ + R R L G N YL K +++
Sbjct: 663 SDVEMPRLDGFTLTSRIRADRTLADLPVVLVTALHSAEDRARGLEAGANAYLAKSGFEQD 722
Query: 2395 VLLEAIQRLV 2404
LLEA++RL+
Sbjct: 723 NLLEAVRRLI 732
Score = 41.6 bits (96), Expect = 5e-07
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 1477 FLEEGFDLIESAAGGLQRWMADVDNSFELEALQRDLHTLKGGARMADIREIGDLSHELEF 1536
F E + + A L W + +E+L R++H++KG +R A I EI + H E
Sbjct: 16 FRAEAAERLAILADTLANWREGGTSEQGIESLFREVHSIKGASRAAGIGEIERICHAWES 75
Query: 1537 LYEGLCAGNYRASPELFGLLQACQDRLAEMLEAVRAHQPVPSGE--ALIETIRRFRNNPE 1594
L + + +PE ++ C+ L ++++ + A Q V E +I+++ E
Sbjct: 76 LLGAVRHADIELTPE---RVELCRLAL-KLVQRLHAGQEVDGYELAQMIDSLNDSTLGQE 131
Query: 1595 EQLSIPSSVSLKAAQDDAQQSAEAEILDIFVEEADDLLE 1633
+L + + + QD E LD + ++ LL+
Sbjct: 132 VELPVVEAPIAELPQDPTTVRVATERLDALLFHSEVLLQ 170
Score = 39.3 bits (90), Expect = 2e-06
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 1231 QDELDHEMVEIFLDEAVDLMESAGHALDRWLADPANQMALSALLRDLHTLKGGARMAAIR 1290
+D L + F EA + + L W ++ + +L R++H++KG +R A I
Sbjct: 5 RDALRQRLQASFRAEAAERLAILADTLANWREGGTSEQGIESLFREVHSIKGASRAAGIG 64
Query: 1291 PIGDLAHELESL 1302
I + H ESL
Sbjct: 65 EIERICHAWESL 76
Score = 38.5 bits (88), Expect = 4e-06
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 9/176 (5%)
Query: 1047 ALFLSEGMDILLDAEDLLRSWREHPAERQELSALLQELTTLGQGAKMADLPQMEALCQVL 1106
A F +E + L D L +WRE Q + +L +E+ ++ ++ A + ++E +C
Sbjct: 14 ASFRAEAAERLAILADTLANWREGGTSEQGIESLFREVHSIKGASRAAGIGEIERICHAW 73
Query: 1107 LRLYAVVEEGRLAVSERFFDDVEQGHEALVGMMDQVAAALQVS--EQSELVARL-EALLA 1163
L V + ++ + VE AL ++ ++ A +V E ++++ L ++ L
Sbjct: 74 ESLLGAVRHADIELTP---ERVELCRLAL-KLVQRLHAGQEVDGYELAQMIDSLNDSTLG 129
Query: 1164 EAIDPLSLEQPF-ERSVEPDQVAVAIEAPLTLLPAEAEAEAEAEAEAEAEAEAEAE 1218
+ ++ +E P E +P V VA E L L +E + + EA+A A + E
Sbjct: 130 QEVELPVVEAPIAELPQDPTTVRVATER-LDALLFHSEVLLQHKLEAQAHARSLQE 184
Score = 37.4 bits (85), Expect = 9e-06
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 894 SADDDALDPQLLEIFRNEAEAHLTTLVSFLADCAQR-LPQPVTDALQRALHTLKGSAHMA 952
S D DAL +L FR EA L L LA+ + + ++L R +H++KG++ A
Sbjct: 2 SFDRDALRQRLQASFRAEAAERLAILADTLANWREGGTSEQGIESLFREVHSIKGASRAA 61
Query: 953 GILPVAEIATPLEKMAKEFKTNLIQMDLAEAELLHEAELLLRKGLTNLDHEPLAPIEGAA 1012
GI +E++ +++ L + A+ EL E L R L +
Sbjct: 62 GI-------GEIERICHAWESLLGAVRHADIELTPERVELCRLALKLVQRLHAGQEVDGY 114
Query: 1013 EFLLKVHTLHQARL---VEAGARQHNDAGETRDPNMIALFLSEGMDILLDAEDLLRSWRE 1069
E + +L+ + L VE + A +DP + + +E +D LL ++L +
Sbjct: 115 ELAQMIDSLNDSTLGQEVELPVVEAPIAELPQDPTTVRV-ATERLDALLFHSEVL---LQ 170
Query: 1070 HPAERQELSALLQE 1083
H E Q + LQE
Sbjct: 171 HKLEAQAHARSLQE 184
Score = 36.6 bits (83), Expect = 2e-05
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 11/185 (5%)
Query: 740 DEEPVDEDLLEVFIEEAAEVLETIGEQLPRWFADTEDKEALGEVRRAFHTLKGSGRMVRA 799
D + + + L F EAAE L + + L W ++ + + R H++KG+ R
Sbjct: 4 DRDALRQRLQASFRAEAAERLAILADTLANWREGGTSEQGIESLFREVHSIKGASRAAGI 63
Query: 800 LIIGELAWSIENLLNRVLDRSIQVTDPVKQVVTGVIALMPALVDEFAAKAQRQRDDVDQL 859
I + + E+LL V I++T ++V +AL LV A + ++ Q+
Sbjct: 64 GEIERICHAWESLLGAVRHADIELTP--ERVELCRLAL--KLVQRLHAGQEVDGYELAQM 119
Query: 860 AAAAHALAKGQPAMLSQPAVMPATPAEDSSPETFSADDDALD-----PQLLEIFRNEAEA 914
+ + GQ L P V P T + LD ++L + EA+A
Sbjct: 120 IDSLNDSTLGQEVEL--PVVEAPIAELPQDPTTVRVATERLDALLFHSEVLLQHKLEAQA 177
Query: 915 HLTTL 919
H +L
Sbjct: 178 HARSL 182