Pairwise Alignments

Query, 2408 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

Subject, 750 a.a., Sensor histidine kinase RcsC from Pseudomonas sp. RS175

 Score =  340 bits (872), Expect = 5e-97
 Identities = 247/803 (30%), Positives = 402/803 (50%), Gaps = 74/803 (9%)

Query: 1614 QSAEAEILDIFVEEADDLLEEMESALGRWDAGREDAAPLADMLRVLHTLKGGARLAGQTD 1673
            Q  +A +L++F  EA+  ++ + + L   +        L   +R  H+LKG AR+ G   
Sbjct: 5    QMRDASLLELFSLEAEAQVQVLSAGLLALERDPTQVEHLESCMRAAHSLKGAARIVGVDA 64

Query: 1674 LGNMAHDLEQMLGEAQQQGAPWPDSLFLDVQQGYDALLKDVEQLRANLASD--------G 1725
              ++AH +E  L  AQ+            + QG D L +      +  ASD        G
Sbjct: 65   GVSVAHVMEDCLVSAQEGRLRLSAEHIDALLQGTDLLTRIATPGNSVGASDVEGYVALMG 124

Query: 1726 ETRSDSSEASQPEAQDLEPQLPSEPLMLAQPIVAASTQPAPSSSPAKVLPFIRRAQLAAQ 1785
                 S   +   A+ +EP           P+     +PAP+  P +  P  +R      
Sbjct: 125  RLLDPSGAPAAVSARPIEPM----------PVQLPELEPAPA--PMEPAPKGKRVS---- 168

Query: 1786 EAAARRAPQELVKVPAELLEGLVNLAGETSIFRGRVEQQVSDVGFTLGEMEATIERVRDQ 1845
                    + +++V AE L  L++L+ ++ +   R+   +           AT++R    
Sbjct: 169  -----EGGERVLRVTAERLNSLLDLSSKSLVETQRLRPWL-----------ATMQR---- 208

Query: 1846 LRRLDTETQAQILSRYQAEAERAGYDDFDPLEMDRHSQLQQLSRALFESASDLLDLKETL 1905
                        L R Q    RA  ++ + + +  H+   Q   AL ++   L + ++ L
Sbjct: 209  ------------LKRQQGNGLRA-LEELN-VHLKDHALSLQAQEALGDARRLLAETQQLL 254

Query: 1906 AARNRDAETLLLQQARVNTELQEGLMRTRMVPFERLVPRLRRIVRQVAGELGKQVEFMVG 1965
            A +  + +    Q ++    L +  +  RM PF  ++    R+VR +   LGKQV   + 
Sbjct: 255  AQKVAELDEFAWQASQRAQVLYDTALACRMRPFADVLSGQARMVRDLGRSLGKQVRLEIE 314

Query: 1966 NATGEMDRSVLERIVAPLEHMLRNAVDHGIESVERRRAVGKPEQGTIRLDLAREGGDIVL 2025
                ++DR VLE++ APL H+LRNAVDHGIES ++R   GKP +G IRL  + + G +VL
Sbjct: 315  GEKTQVDRDVLEKLEAPLTHLLRNAVDHGIESPDQRLLAGKPAEGLIRLRASHQAGLLVL 374

Query: 2026 TLADDGAGINLDAVRRKAIERGLMV--ADSDLSEHEILQFILEAGFSTAERVTQISGRGV 2083
             L+DDGAG++L+ VRR  +ERGL      + LSE E+L F+   GFS  +RVT++SGRGV
Sbjct: 375  QLSDDGAGVDLERVRRSVVERGLSPEHTAASLSEEELLAFLFLPGFSLRDRVTEVSGRGV 434

Query: 2084 GMDVVHSEVKQLGGSMTIESTLGQGTRFLIRLPFTVSVNRALMVYSGEDLYAIPLNTIEG 2143
            G+D V   V+QL G++ +E T G+G+RF + +P T+SV R+L+V  G + YA PL  IE 
Sbjct: 435  GLDAVQHMVRQLRGAVVLEQTAGEGSRFHLEVPLTLSVVRSLVVEVGAEAYAFPLAHIER 494

Query: 2144 IVRVSPYELEAYYQPDAPRFEYAGQAYELRYLGDLLNNGQKPKLVGQSLPLPVILVRSKE 2203
            +  ++P ++          F + G+   L     LLN   +P        L V+++R +E
Sbjct: 495  MCDLAPEDI--VQVEGRQHFWHEGRHVGLVAASQLLN---RPATRNSGQTLKVVVIRERE 549

Query: 2204 HSVAVQVDSLAGSREIVVKSLGPQFAGVHGISGATILGDGRVVVILDLLATIRVLHAYQL 2263
                V V+ + G R +VV  L  +   V  IS   +L DG V +I+D+   +R +     
Sbjct: 550  TIYGVAVERIIGERTLVVLPLDERLGKVQDISAGALLDDGSVALIVDVEDLLRSVDKLLD 609

Query: 2264 T-QLQQPRLFDQTHEPVEVESERPTLVMVVDDSVTVRKVTSRLLERNGMNVLTAKDGVDA 2322
            T +L++    DQ   P +        ++VVDDS+TVR++  +LL   G +V  A DG+D 
Sbjct: 610  TGRLERIARQDQAQAPRK-------RILVVDDSLTVRELQRKLLLGRGYDVAVAVDGMDG 662

Query: 2323 ITQLQERKPDIMLLDIEMPRMDGFEVATLVRHDERLKDLPIVMITSRTGEKHRDRALSIG 2382
               L+    D+++ DI+MPRMDG E+ TL+R D RL+ LP+++++ +  E+ R R L  G
Sbjct: 663  WNALRSEDFDLLITDIDMPRMDGIELVTLLRRDNRLQSLPVMVVSYKDREEDRRRGLDAG 722

Query: 2383 VNEYLGK-PYQESVLLEAIQRLV 2404
             + YL K  + +  LL+A+  L+
Sbjct: 723  ADYYLAKASFHDDALLDAVVELI 745



 Score = 37.7 bits (86), Expect = 7e-06
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 897  DDALDPQLLEIFRNEAEAHLTTLVSFLADCAQRLPQPVT--DALQRALHTLKGSAHMAGI 954
            D   D  LLE+F  EAEA +  L + L    +R P  V   ++  RA H+LKG+A + G+
Sbjct: 4    DQMRDASLLELFSLEAEAQVQVLSAGLL-ALERDPTQVEHLESCMRAAHSLKGAARIVGV 62

Query: 955  LPVAEIATPLEKMAKEFKTNLIQMDLAEAELLHEAELLLRKGLTNLDHEPLAPIEG 1010
                 +A  +E      +   +++     + L +   LL +  T  +    + +EG
Sbjct: 63   DAGVSVAHVMEDCLVSAQEGRLRLSAEHIDALLQGTDLLTRIATPGNSVGASDVEG 118



 Score = 37.0 bits (84), Expect = 1e-05
 Identities = 28/101 (27%), Positives = 41/101 (40%)

Query: 1466 DVERDPELVEIFLEEGFDLIESAAGGLQRWMADVDNSFELEALQRDLHTLKGGARMADIR 1525
            D  RD  L+E+F  E    ++  + GL     D      LE+  R  H+LKG AR+  + 
Sbjct: 4    DQMRDASLLELFSLEAEAQVQVLSAGLLALERDPTQVEHLESCMRAAHSLKGAARIVGVD 63

Query: 1526 EIGDLSHELEFLYEGLCAGNYRASPELFGLLQACQDRLAEM 1566
                ++H +E        G  R S E    L    D L  +
Sbjct: 64   AGVSVAHVMEDCLVSAQEGRLRLSAEHIDALLQGTDLLTRI 104



 Score = 36.2 bits (82), Expect = 2e-05
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 1235 DHEMVEIFLDEA---VDLMESAGHALDRWLADPANQMALSALLRDLHTLKGGARMAAIRP 1291
            D  ++E+F  EA   V ++ +   AL+R   DP     L + +R  H+LKG AR+  +  
Sbjct: 8    DASLLELFSLEAEAQVQVLSAGLLALER---DPTQVEHLESCMRAAHSLKGAARIVGVDA 64

Query: 1292 IGDLAHELESLYEGLSDGRY-VHSQELATLLQ 1322
               +AH +E       +GR  + ++ +  LLQ
Sbjct: 65   GVSVAHVMEDCLVSAQEGRLRLSAEHIDALLQ 96



 Score = 35.8 bits (81), Expect = 3e-05
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 13/154 (8%)

Query: 745 DEDLLEVFIEEAAEVLETIGEQLPRWFADTEDKEALGEVRRAFHTLKGSGRMVRALIIGE 804
           D  LLE+F  EA   ++ +   L     D    E L    RA H+LKG+ R+V       
Sbjct: 8   DASLLELFSLEAEAQVQVLSAGLLALERDPTQVEHLESCMRAAHSLKGAARIVGVDAGVS 67

Query: 805 LAWSIENLLNRV-----------LDRSIQVTDPVKQVVTGVIALMPALVDEFAAKAQRQR 853
           +A  +E+ L              +D  +Q TD + ++ T   ++  + V+ + A   R  
Sbjct: 68  VAHVMEDCLVSAQEGRLRLSAEHIDALLQGTDLLTRIATPGNSVGASDVEGYVALMGRLL 127

Query: 854 DDVDQLAAAAHALAKGQPAMLS--QPAVMPATPA 885
           D     AA +    +  P  L   +PA  P  PA
Sbjct: 128 DPSGAPAAVSARPIEPMPVQLPELEPAPAPMEPA 161