Pairwise Alignments

Query, 528 a.a., fagellar hook-basal body proteins from Pseudomonas stutzeri RCH2

Subject, 443 a.a., Flagellar hook protein FlgE from Pseudomonas fluorescens GW456-L13

 Score =  338 bits (867), Expect = 2e-97
 Identities = 213/531 (40%), Positives = 294/531 (55%), Gaps = 93/531 (17%)

Query: 1   MSFNIGLSGLRAASKDLNVTGNNIANAGTVGFKQSRAEFSDVYAASVLGTGKNPQGSGVL 60
           MSFNIGLSGL AA+K L+VTGNNIAN  T GFK SRAEF DVY+A+ LGTG    G+GV 
Sbjct: 1   MSFNIGLSGLYAANKQLDVTGNNIANVATTGFKSSRAEFEDVYSATRLGTGSKTVGNGVR 60

Query: 61  MSNISQQFNQGNINYTQNALDLAINGNGFFQISNNGAVSYTRAGYFGTDRSGFLVDNFG- 119
           ++N+SQQF QG+++ T N LD+ I GNGFF +SNNG+++YTRAG F TD+ G++ ++ G 
Sbjct: 61  LANVSQQFGQGDVSNTGNVLDMGIQGNGFFVLSNNGSLTYTRAGTFKTDKEGYVTNSDGT 120

Query: 120 YKLQGFPVDGNGNLQNGVIGDLQIQTTNQAPKATSQINTAFNLNSTQKSPVTWQSAYDAS 179
            +LQG+ VD NG + NGV+ DL+I T+N APK+TS +++  NLNST  S V  Q+     
Sbjct: 121 ARLQGYGVDSNGKIVNGVLTDLRIDTSNLAPKSTSTVSSTINLNST--SAVIDQTVAANK 178

Query: 180 LQPAYDAAYNTSLTTAGQAAYDAEFAVSGDPALAEDARAAALVNATNITNAQAAGNAAKA 239
             P+    +  S +T     YD +                         N          
Sbjct: 179 FNPSKTETFTKSFST---PIYDTQ------------------------GNQHTMDQYMVK 211

Query: 240 LPANQAAALTAANGTFNP--ADPTTYNSSTSLNIYDSQGNAHVMTQYFVKTSANTWDMKV 297
             AN     T  +G  NP  +DPT      S   +DS G           TS +T     
Sbjct: 212 TGANTWDTYTLIDGR-NPDGSDPTVTAPVASTMSFDSTGKL---------TSVST----- 256

Query: 298 LIDGRNPASPAQEPPQPYVMGLTFDASGALTAIDNGGSGLFSVSPDRKVTLNSATGNPPS 357
                 P +P   PP               T++         +S D K+T          
Sbjct: 257 ------PVTPPTTPP---------------TSV---------ISSDLKIT---------- 276

Query: 358 GGWIP-AISNGATPATWSANGALANPGGIVLDFSKSTQYASAFAVNSVAQDGYTTGELAG 416
             W P +++NG     W+ANGA A+P G+ +  + +TQ+ +  A +  AQ+GY TG++  
Sbjct: 277 -NWTPGSVTNG----VWTANGAAADPAGLTIAMANTTQFNADTARSIPAQNGYATGQITN 331

Query: 417 LEIDDTGVIFARYTNGQSKVQGQIILANFANVQGLTPVGKTQWVQSFESGEPVVGTPGSG 476
           L ID +GV+ A ++N Q+K  GQI LA+F N QGL PVG T W +++ SG P    P +G
Sbjct: 332 LTIDGSGVLLANFSNNQTKPIGQISLASFTNEQGLQPVGGTSWKETYASGIPGYDAPETG 391

Query: 477 TLGALQAGALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIINL 527
           TLG++ + +LE+SNV L+++LV+LI AQ NYQANAKTI T+S I QTII +
Sbjct: 392 TLGSIVSNSLEESNVNLTNELVDLIKAQSNYQANAKTISTQSTIMQTIIQM 442