Pairwise Alignments

Query, 528 a.a., fagellar hook-basal body proteins from Pseudomonas stutzeri RCH2

Subject, 399 a.a., flagellar hook protein FlgE from Dickeya dadantii 3937

 Score =  167 bits (423), Expect = 7e-46
 Identities = 115/326 (35%), Positives = 168/326 (51%), Gaps = 49/326 (15%)

Query: 205 AVSGDPALAEDARAAALVNATNITNAQAAGNAAKALPANQAAALTAANGTFNPADPT-TY 263
           A    PA+ + A    L       +A+A   A+     N + +      T++P DPT T 
Sbjct: 121 ATGTPPAIQQGADPVGLSIPETTMSAKATSTASIIASLNSSDS----TNTWDPTDPTNTS 176

Query: 264 NSSTSLNIYDSQGNAHVMTQYFVKTSANTWDMKVLIDGRNPASPAQEPPQPYVMGLTFDA 323
           N   S+  YDS GNAH    YFVK+++N+WD+    D     +  Q P       L+F+ 
Sbjct: 177 NYKGSITTYDSLGNAHNFALYFVKSASNSWDVYAQ-DTSITGAGFQGPTT-----LSFNT 230

Query: 324 SGALTAIDNGGSGLFSVSPDRKVTLNSATGNPPSGGWIPAISNGATPATWSANGALANPG 383
           SGALT          + +P    T++ AT             NG+  +T++         
Sbjct: 231 SGALT----------TTTP---ATISMAT------------LNGSAASTFN--------- 256

Query: 384 GIVLDFSKSTQYASAF-AVNSVAQDGYTTGELAGLEIDDTGVIFARYTNGQSKVQGQIIL 442
              L F+ + Q  S   +  +  QDGY  GEL G  I + G +   Y+N ++++ GQI L
Sbjct: 257 ---LSFTGTVQQNSGSNSTKTPTQDGYEPGELTGYSISEDGSVVGSYSNNKTQLLGQIAL 313

Query: 443 ANFANVQGLTPVGKTQWVQSFESGEPVVGTPGSGTLGALQAGALEDSNVELSDQLVNLIV 502
           ANFAN +GL+P G   W  +  SG+ VVG+ G+G LG L   A E SNV++S +LVN+IV
Sbjct: 314 ANFANPEGLSPQGDNVWAATGNSGQAVVGSAGTGNLGKLVGKATESSNVDMSKELVNMIV 373

Query: 503 AQRNYQANAKTIETESAITQTIINLR 528
           AQRNYQ+NA+TI+T+  I  T++NLR
Sbjct: 374 AQRNYQSNAQTIKTQDQILNTLVNLR 399



 Score =  129 bits (324), Expect = 2e-34
 Identities = 101/292 (34%), Positives = 148/292 (50%), Gaps = 28/292 (9%)

Query: 1   MSFNIGLSGLRAASKDLNVTGNNIANAGTVGFKQSRAEFSDVYAASVLGTGKNPQGSGVL 60
           MSF+  +SGL AAS +L+V GNNIAN+ TVGFK S   F+D+YA S +G G         
Sbjct: 1   MSFSQAVSGLNAASNNLDVIGNNIANSATVGFKASNISFADMYAGSNVGLGTR------- 53

Query: 61  MSNISQQFNQGNINYTQNALDLAINGNGFFQISN-NGAVSYTRAGYFGTDRSGFLVDNFG 119
           ++++ Q F+ G+I  T  +LD+AINGNGF+++ N NG+V Y+R G F  D S  +V+  G
Sbjct: 54  VASVLQDFSNGSITSTSRSLDVAINGNGFYRLLNSNGSVVYSRNGQFTLDSSRNIVNAQG 113

Query: 120 YKLQGFPVDGN-GNLQNGV--IGDLQIQTTNQAPKATSQINTAFNLNSTQKSPVTWQSAY 176
            +L G+P  G    +Q G   +G L I  T  + KATS  +   +LNS+  S  TW    
Sbjct: 114 LQLTGYPATGTPPAIQQGADPVG-LSIPETTMSAKATSTASIIASLNSSD-STNTWDPT- 170

Query: 177 DASLQPAYDAAYNTSLTTAGQAAYDAEFAVSGDPALAEDARAAALVNATNITNAQAAG-- 234
                P   + Y  S+TT         FA+    + +      A    T+IT A   G  
Sbjct: 171 ----DPTNTSNYKGSITTYDSLGNAHNFALYFVKSASNSWDVYA--QDTSITGAGFQGPT 224

Query: 235 ----NAAKALPANQAAALTAANGTFNPADPTTYNSSTSLNIYDSQGNAHVMT 282
               N + AL     A ++ A  T N +  +T+N S +  +  + G+    T
Sbjct: 225 TLSFNTSGALTTTTPATISMA--TLNGSAASTFNLSFTGTVQQNSGSNSTKT 274