Pairwise Alignments

Query, 531 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  227 bits (578), Expect = 1e-63
 Identities = 140/353 (39%), Positives = 201/353 (56%), Gaps = 2/353 (0%)

Query: 178 VALGSTLCILLLVILGRIAGMNW-LMLQIDELRGRLEKVSQGDFSAPLQVRHADDEMGMI 236
           V L S L  + L+I    AG        +  L   ++KV+ GD +    V  + DE+G +
Sbjct: 325 VVLVSALSAVFLLIFYLYAGFYASTRTTLRRLGAMMDKVAAGDMTVTF-VAQSRDELGDL 383

Query: 237 TLAYNRLLGQVGEMIKGVRQAADDADAQCVRMAGLAGDSARNVEGQQAEIDQVATAMNEM 296
              +N  + ++ ++I+ V       + Q  ++  ++  S + V GQ+ +I+QVATAMN+M
Sbjct: 384 GQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSGQRMQIEQVATAMNQM 443

Query: 297 LATSHEVARSTVEAANAADVAEQETNAGSTVMNESVGAIRTLSGHVDGLSDVMQQLVQDS 356
            +T+ EVARS   A ++A     ET +G +++    G+I  L+  +D    V+ QL  DS
Sbjct: 444 SSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATEIDQSVQVINQLATDS 503

Query: 357 HEIGKVLNVISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSAKEVG 416
             I  VL VI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ S +E+ 
Sbjct: 504 QSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLARRTQHSTEEIE 563

Query: 417 VLVERLQSQATRAGHAMDASRQSSATTLTQIEAAQHALGQIVGAVQTIRGMTNQIATAAE 476
            ++ RLQS    A  AM +S   ++ T+ Q E  Q AL  I+GAV  I     QIA A E
Sbjct: 564 QMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVGMIVDQNQQIAAAVE 623

Query: 477 EQSQVAEDMNQSLTRIAQVADQAAGVTQDTAASGNTIMQSMKGLKSLTGRFRL 529
           +Q+ VA D++Q++  I +  + AA     T A+   +   +  LK L G FR+
Sbjct: 624 QQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQLIGAFRV 676



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 47/252 (18%), Positives = 96/252 (38%), Gaps = 29/252 (11%)

Query: 137 AGQSADVKAIATDSNDILAAANEVVSLISAEANRSASQQLWVALGSTLCILLLVILGRIA 196
           +GQ   ++ +AT  N + + A EV    +A  + + S       G +   L+    G IA
Sbjct: 427 SGQRMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRS---LVQSQQGSIA 483

Query: 197 GMNWLMLQIDELRGRLEKVSQGDFSAPLQVRHADDEMGMITLAYNRLLGQVGEMIKGVRQ 256
            +   + Q  ++  +L   SQ   S    ++   ++  ++ L       + GE  +G   
Sbjct: 484 RLATEIDQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAV 543

Query: 257 AADDADAQCVRMAGLAGDSARNVEGQQAEIDQVATAMNEMLATSHEVARSTVEAANAADV 316
            AD+       +A     S   +E   + +     A  + + +SH++A  TV  +     
Sbjct: 544 VADEVRT----LARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQ 599

Query: 317 AEQETNAGSTVMNESVGAIRTLSGHVDGLSDVMQQLVQDSHEIGKVLNVISGIAEQTNLL 376
           A          +   +GA+  +      ++  ++Q    +H+I +            N++
Sbjct: 600 A----------LENILGAVGMIVDQNQQIAAAVEQQTAVAHDIDQ------------NIV 637

Query: 377 ALNAAIEAARAG 388
            +N A E A  G
Sbjct: 638 EINRAGEHAAEG 649