Pairwise Alignments

Query, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  439 bits (1129), Expect = e-127
 Identities = 249/560 (44%), Positives = 341/560 (60%), Gaps = 13/560 (2%)

Query: 63  RRFDEQQRAQHVQETSLKQAAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYSTEEVLG 122
           RR  EQQR           AA VF++  EG+++ D   R++ VN A   ++GY  EE+LG
Sbjct: 395 RRQAEQQRL----------AATVFEAASEGMVIMDATYRVLAVNDACCALSGYEREELLG 444

Query: 123 QTPKLFASGKHDAEFYQQMWLALKDKGEWSGEIWNRRKNGEVYPQWQNLRCIHDNQGQLS 182
           ++    A        Y+ M  AL+  G W GE+  +RK+GEVYPQW  LR + D+   ++
Sbjct: 445 RSIARIAGTPESQRQYEAMRDALERHGHWQGELIEKRKSGEVYPQWVQLREVRDSDDSVT 504

Query: 183 HYVAVFSDLSALKRSREELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLI 242
           H VA  SDLS  ++  E L  L HYD L  L NR LF ER  +  +R R + R+ A+L I
Sbjct: 505 HVVAFISDLSVRRKIEERLRYLTHYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYI 564

Query: 243 DLDHFKDINESLGHSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCEGYGAEKATA 302
           DLD FK +NESLGH   DALL+ VS RLS  L +  T+ RL GDEF +L + YG+  + A
Sbjct: 565 DLDRFKLLNESLGHEAADALLREVSRRLSTTLAEADTIARLSGDEFVVLLDAYGSLSSLA 624

Query: 303 -LALRILDRLNESFHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGR 361
            L  R+L R+ +   I +QEL  SASIG+ L P   + ++AE L+R A+ A+ +AK  G 
Sbjct: 625 HLGSRLLQRIRKPMVIDEQELVISASIGVSLLP--DNSRDAEALLRQANIAMQQAKHLGG 682

Query: 362 STYAFYSEELTSQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHP 421
           +T  F+++   + +   ++L   LR+ALE GQL + YQP   L   ++   EALVRW+HP
Sbjct: 683 NTLQFFTDRPQASSMHYLQLENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHP 742

Query: 422 EKGLIAPGVFIPIAEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNG 481
           E GL+AP  FIP+AEETGLI  +  +VL +AC QAR+W   G     ++VN+S +    G
Sbjct: 743 ELGLVAPAQFIPLAEETGLIIPLGEFVLREACRQARQWQQDGLAAIRVSVNLSVKQLRQG 802

Query: 482 ELDLQVATILARSGLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYS 541
                V  +L  +GL A  LELE+TES ++ D D A+ + ++LRALGV+LAIDDFGTG+S
Sbjct: 803 NFVSLVRQVLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFS 862

Query: 542 SLQRLKRMNVHKLKIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAF 601
           SL  LKR  V  +KID+ F+  L     DAAITR++I + H+L  KVVAEG+ET  Q  F
Sbjct: 863 SLSYLKRFPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDF 922

Query: 602 LLAQNCDYGQGYGFARPQPA 621
           L A +CD  QGY  + P PA
Sbjct: 923 LKANHCDEIQGYLLSPPVPA 942