Pairwise Alignments

Query, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 695 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  380 bits (977), Expect = e-110
 Identities = 204/430 (47%), Positives = 284/430 (66%), Gaps = 2/430 (0%)

Query: 193 ALKRSREELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLIDLDHFKDINE 252
           +L  + +EL QLA +D L +LPNR L  +R +Q + +        AL+ IDLD FK +N+
Sbjct: 251 SLTLANQELTQLALHDTLTDLPNRTLLADRIEQAIAKVAEQGGCFALMFIDLDGFKPVND 310

Query: 253 SLGHSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCEGYGAEKATALALRILDRLN 312
           + GH +GD LL+AV+ RL  HL    TL R+GGDEF LL E      A  +A++ ++ ++
Sbjct: 311 AFGHHIGDLLLKAVAARLRGHLHSQDTLARIGGDEFVLLVELQEPNDAMDVAVKQVNLVS 370

Query: 313 ESFHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEELT 372
             F + + +L  SAS+GIVLYP   + Q+  +L+RNAD+A++ AKS+G++ Y+F+   + 
Sbjct: 371 RPFRVAEHDLQLSASLGIVLYP--GNGQDQHELLRNADAAMYHAKSAGKNGYSFFDVSMN 428

Query: 373 SQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFI 432
           S ARQ+++L+  LR ALEQ Q RLHYQP +D +     G EAL+RW+HP++GL+ P  FI
Sbjct: 429 SNARQQLQLLQDLRLALEQRQFRLHYQPKFDAQACQPIGAEALLRWEHPQQGLLLPDRFI 488

Query: 433 PIAEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVATILA 492
            +AE+TGLI  I  WVL +AC Q R+WL QGH    +AVN+S+  F +  L   VA  L 
Sbjct: 489 GLAEKTGLIIPIGEWVLTEACRQMRQWLDQGHHGWRMAVNLSAIQFCHAGLVDSVARALQ 548

Query: 493 RSGLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVH 552
           ++GL A  L LEITE+  M D DA+L +LQRL  +GV L+IDDFGTGYSSL  LKR+  +
Sbjct: 549 QNGLPANCLTLEITETTAMHDADASLTVLQRLSDMGVDLSIDDFGTGYSSLMYLKRLPAN 608

Query: 553 KLKIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQG 612
           +LKID+GFVR L  D DDAAI  +++ L   LGL++VAEG+ET +Q  FL    CD  QG
Sbjct: 609 ELKIDRGFVRDLEQDSDDAAIVSAIVALGQALGLRIVAEGVETDKQQDFLTRLGCDSLQG 668

Query: 613 YGFARPQPAD 622
           Y   +P PA+
Sbjct: 669 YLLGQPVPAE 678