Pairwise Alignments

Query, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  449 bits (1154), Expect = e-130
 Identities = 236/564 (41%), Positives = 346/564 (61%), Gaps = 11/564 (1%)

Query: 63   RRFDEQQRAQHVQETSLKQAAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYSTEEVLG 122
            R   +Q+RA    E  L+ AA VF+ +   +L+TDP   IV  N AFSR++GY+  EVL 
Sbjct: 703  RDISQQRRA----EKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLD 758

Query: 123  QTPKLFASGKHDAEFYQQMWLALKDKGEWSGEIWNRRKNGEVYPQWQNLRCIHDNQGQLS 182
            Q P +    +      + +   L  +G W GE+W +R++G+ YP W  +  + D++G L+
Sbjct: 759  QLPGMLTVDEQQEGHLRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLA 818

Query: 183  HYVAVFSDLSALKRSREELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLI 242
             YV  F+D+S  K S + + +LA+YD L +LPNR LF +R    L++A   K    L+ +
Sbjct: 819  SYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFL 878

Query: 243  DLDHFKDINESLGHSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCE-----GYGA 297
            DLD FK IN+SLGH+ GD +L+ ++ RL   ++   T+ R+GGDEF LL +         
Sbjct: 879  DLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMAL 938

Query: 298  EKATALALRILDRLNESFHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAK 357
             +A  +A  IL  L   F + ++E F +ASIGI L   P D     QLM+NAD+A++ AK
Sbjct: 939  NRAIHVAENILGSLVRPFVLENREFFVTASIGIAL--SPQDGSELSQLMKNADTAMYHAK 996

Query: 358  SSGRSTYAFYSEELTSQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVR 417
              G++ + FY  E+ + A +R+EL + LR A+EQ +  L+YQP +      ++G EAL+R
Sbjct: 997  ERGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLR 1056

Query: 418  WQHPEKGLIAPGVFIPIAEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRL 477
            W+HP +GL+ PG FIP+ EE GL+  +  WVL +A  Q + W      +  ++VNIS+R 
Sbjct: 1057 WRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQ 1116

Query: 478  FGNGELDLQVATILARSGLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFG 537
            F +G+L  ++A IL  SGL    LELE+TES +M++ + AL++L  L+ LG+ +A+DDFG
Sbjct: 1117 FSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFG 1176

Query: 538  TGYSSLQRLKRMNVHKLKIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAE 597
            TGYSSL  LK+  +  LKID+ FV GLP+   DA I R++I +AH+L L V+AEG+ET E
Sbjct: 1177 TGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHE 1236

Query: 598  QAAFLLAQNCDYGQGYGFARPQPA 621
            Q  FL    CD  QGY F RP PA
Sbjct: 1237 QLEFLREHGCDEVQGYLFGRPMPA 1260