Pairwise Alignments
Query, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2
Subject, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2
Score = 184 bits (466), Expect = 4e-50
Identities = 130/394 (32%), Positives = 197/394 (50%), Gaps = 34/394 (8%)
Query: 453 HKHGHVVPVLLRGYIQRDAQGMAQRISGTLMDLTERKRVEQM--------------KNDF 498
H+ G +PV + + G Q + ++D++ RK E+ K++F
Sbjct: 550 HRDGSALPVEIG--LSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEF 607
Query: 499 VSTVSHELRTPLTSISGALGLIVGGALGSAPASMQQMLEIAYRNSLRLGHLINDLLDMEK 558
++ +SHELRTPL SI + G+ + +I +R L LIND+LD+ K
Sbjct: 608 LANMSHELRTPLNSILILSDQLRQNGAGNLNEKQVRHADIIHRAGHELLQLINDVLDLAK 667
Query: 559 IAAGKMSFELREHSLGDLLEESLASNQALCEQHGIRCSLDHPVDVLVWV--DGMRLQQVL 616
I +G M +L +L ++L E S + EQ G+ ++ DV V + D RLQQ+L
Sbjct: 668 IESGHMQLKLEPLNLREMLTEQQTSLGPMAEQKGLLLKIEVDADVPVTLNSDRARLQQIL 727
Query: 617 GNFLSNAVKFTPQGGEIRLHSSLR------GPRVRISVTDQGPGIPEAFRSRVFEKFAQA 670
N L+NA+KFT QG E+ L +S R G +++ V D G GI + R+F+ F Q
Sbjct: 728 RNLLTNALKFTEQG-EVELLASCRSAEDGSGQTLQLQVRDSGIGIAKDQHERIFQAFQQI 786
Query: 671 DASDSRQKSGTGLGLAITKELIERMGGTVGFDCPPGQGTTFWCELPIQQ---------LA 721
D S SR GTGLGLAIT++L+E +GG V + GQG TF LPI L
Sbjct: 787 DGSISRHYGGTGLGLAITRQLVEVLGGQVTVESELGQGATFTVVLPIATVSGASTQALLP 846
Query: 722 SETDSRDDLPRILVVEDEPDTGRLLHMMLREGGYGVERVQSLHQAREKLAAGRYEAMTLD 781
+ R P +L++ED+ D ++ + + G+ + Q E L + A+ LD
Sbjct: 847 PQPQRRGRGPGLLIIEDDTDFASVVAEVGQSHGFTSLICNTGEQGLEALRREHFAAVILD 906
Query: 782 LHLPDGSGMQLIDELREKPAMQNLPIVVISAAHQ 815
+ LPD SG Q+ ELR Q +P+++IS Q
Sbjct: 907 ILLPDISGWQIHRELRGDERHQGMPVIIISCVPQ 940
Score = 175 bits (444), Expect = 1e-47
Identities = 136/493 (27%), Positives = 225/493 (45%), Gaps = 48/493 (9%)
Query: 17 LFSRRNGIAWAMLLFTLLVQLVV-------WHNLRSSENRAAEQQFEMLSEKVTEAIRKR 69
L SRR+ W LL L + + WH EQ+F + + +R+R
Sbjct: 7 LHSRRS---WLPLLVALALMAGLGGWIGWQWHVQEQRSKVEQEQRFTFAVDDIEHTLRER 63
Query: 70 LRDHEQILLGGAGLFDAVEQVSREQWHAYVERLLLPDRYPGIQGVGFTQAIPAASRDAHV 129
+R +E +L G AG+ ++V + W ++L L D YPGIQ V + + D +
Sbjct: 64 MRAYEMVLRGLAGVVAGSDEVKVDDWARAADQLQLQDFYPGIQAVALARHATPETLDGII 123
Query: 130 ARIRAQGFPDYDIYPPGPRDFYTSIIFLEPFVGRNLAAFGYDMYSEPTRRRAMRRAAQLG 189
+IR+ G + +YP G RD Y ++ P RN G+D++SE TRR A+ G
Sbjct: 124 EQIRSSGRERFRMYPSGVRDEYVVTDYIHPTDWRNRRVLGFDLFSEATRREAIVNTRNSG 183
Query: 190 ETSITGKVTLMQETHGKVQAGVLLYVPVYQPGASLLTPKQRMQALIGFVYSPYRVEDLMR 249
+TG + L QET VQ GVLL+ P+Y A + T ++R +A +G ++ +R+ DLM
Sbjct: 184 NPVLTGPLRLKQETEQNVQVGVLLFFPLYAATAPVTTEEERQRAFVGTLHGAFRLTDLME 243
Query: 250 GILRAADLPLALHIYASDGEQAEQLIYASRETVSPDHSRYSQVQQLNLYGQTWTLRLDSL 309
GIL + L L ++ D + + A R VS D +++ +++ + +YG++W L++ S
Sbjct: 244 GILGSRSRMLQLQLF--DAANPDSPLLAGRAPVSAD-AKFQRIRNIYMYGRSWQLQVAST 300
Query: 310 PEFDNRFH-SNEALVMALGLGLSLLVFFLTSSLALRHSRAQAMAEEMTRHIRQSRHDLRL 368
PE++ +N A +A L + L L RA ++ ++ +++ R
Sbjct: 301 PEYEAVLRDNNRAFSLAAALTAAALFSLLVGGYLYLRERALRNSQALSLQLQEREARFRQ 360
Query: 369 SEERLSLALKGSNDGLWDLDLDAGSMYASPRAWEILGYRPNELTCDLKLWERVT------ 422
E+L +A N G A+ A ++ G T +L ERV+
Sbjct: 361 LIEQLPVATLLCNAG-------GRIELANQSAAQLFG-----STAELLAGERVSRYVPGV 408
Query: 423 VAEDLAQQKARLAQTMLSNVDHFTTELRLQHKHGHVVPVL--LRGYIQRDAQGMAQRISG 480
+ E + +Q +Q EL+ Q + G +PV L + DA
Sbjct: 409 LGEQILRQLRETSQ----------LELQAQREDGRPIPVAVSLTSFNHDDALYYVL---- 454
Query: 481 TLMDLTERKRVEQ 493
L+DL RKR E+
Sbjct: 455 NLLDLQARKRDEE 467
Score = 41.2 bits (95), Expect = 4e-07
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 732 RILVVEDEPDTGRLLHMMLREGGYGVERVQSLHQAREKLAAGRYEAMTLDLHLPDGSGMQ 791
R+L+VE EP L+ GY V S AR A + + +D L DGSG+
Sbjct: 977 RLLLVEAEPRRRVLIRDYFERLGYSVTLAGSSDSARLAYAEQTFSVVVVDSELADGSGLD 1036
Query: 792 LIDELREKPAMQNLPIVVIS 811
L+D +++ + ++V S
Sbjct: 1037 LLDAFERLRSLEGVTVLVNS 1056