Pairwise Alignments

Query, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1155 a.a., Sensor histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  160 bits (405), Expect = 4e-43
 Identities = 114/390 (29%), Positives = 185/390 (47%), Gaps = 42/390 (10%)

Query: 489 KRVEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGSAPASMQQMLEIAYRNSLRLGH 548
           +R  + K++F++ +SHELRTPL S      L+   A G+      +  E  Y     L +
Sbjct: 481 QRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENAEGNLSEEQVKFAESIYSAGNDLLN 540

Query: 549 LINDLLDMEKIAAGKMSFELREHSLGDLLEESLASNQALCEQHGI--RCSLDHPVDVLVW 606
           LIND+LD+ K+ AGK+        +  L+E      Q L    G+     ++  V V ++
Sbjct: 541 LINDILDIAKVEAGKLEVRPETTQVERLVEGLRGMFQPLAGHKGLAFEVKVEPQVPVTLF 600

Query: 607 VDGMRLQQVLGNFLSNAVKFTPQGGEIRLHSSLRGPR-VRISVTDQGPGIPEAFRSRVFE 665
            D  RL+Q+L N LSNA+KFT +G ++ ++ S +    +  +V D G GI    +  +F 
Sbjct: 601 TDRQRLEQILKNLLSNAIKFTERG-QVSMNVSFQADSGIVFAVRDTGIGIAADQQQAIFG 659

Query: 666 KFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCPPGQGTTFWCELPIQQLASETD 725
            F Q D + +R+  GTGLGL+I+++L   +GG +  D  PGQG+ F   LP +  A   D
Sbjct: 660 AFHQVDGTSNRRYGGTGLGLSISRDLAHLLGGQINVDSSPGQGSVFSLILPERYAAEAED 719

Query: 726 SR-------------------------------DDLPR-------ILVVEDEPDTGRLLH 747
                                            DD  R       ILV+EDEP+  R+L 
Sbjct: 720 VEPQSLRPAVDALPPAPQAPLAAAVTRPAPAFADDRERAPFDTRCILVIEDEPNFARILF 779

Query: 748 MMLREGGYGVERVQSLHQAREKLAAGRYEAMTLDLHLPDGSGMQLIDELREKPAMQNLPI 807
            +  E GY         +  E  A    +A+ LD+ LPD SG+ ++  L+E+ + +++P+
Sbjct: 780 DLAHELGYSCLVAHGADEGFELAAQYIPDAILLDMRLPDHSGLTVLQRLKEQASTRHIPV 839

Query: 808 VVISAAHQFDQAQFPERIVWLHKPITNVQL 837
            +IS   + + A     + +  KP +  +L
Sbjct: 840 HIISVEDRVEAAMHMGAVGYAVKPTSREEL 869



 Score = 34.3 bits (77), Expect = 4e-05
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 718  QQLASETDSRDDL---PRILVVEDEPDTGRLLHMMLREGGYGVERVQSLHQAREKLAA-G 773
            Q++     SRD +    ++L+V+D+      L   L   G  VE  ++  +A E+L    
Sbjct: 1015 QRMLKTARSRDKVFEGRKVLLVDDDVRNIFALTSALEHKGAIVEIGRNGREAIERLEQHD 1074

Query: 774  RYEAMTLDLHLPDGSGMQLIDELREKPAMQNLPIVVISAAHQFDQAQ 820
              + + +D+ +P+  G +    +R++P  + LPI+ ++A    D  Q
Sbjct: 1075 DIDLVLMDVMMPEMDGFEATRLIRQQPRWRKLPIIAVTAKAMKDDQQ 1121



 Score = 32.3 bits (72), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 35/80 (43%)

Query: 730 LPRILVVEDEPDTGRLLHMMLREGGYGVERVQSLHQAREKLAAGRYEAMTLDLHLPDGSG 789
           L  IL+VED+      +  ++ +    +  V     A   L    Y+ M +DL LPD  G
Sbjct: 884 LKHILLVEDDDLQRESIARLIGDDDVEITAVAMAQDALALLRQNIYDCMIIDLKLPDMLG 943

Query: 790 MQLIDELREKPAMQNLPIVV 809
            +L+  +  +      P++V
Sbjct: 944 NELLKRMTAEDIRAFPPVIV 963