Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

 Score =  152 bits (383), Expect = 8e-41
 Identities = 167/645 (25%), Positives = 271/645 (42%), Gaps = 99/645 (15%)

Query: 5   LVIVESPAKAKTINK-----------YLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKA 53
           L + E P++AK I             +LGN   V   IGH+ +                 
Sbjct: 3   LYLCEKPSQAKDIAAVLGASRRGDGCWLGNGVTVTWCIGHLLET---------------- 46

Query: 54  AAAEAPVLSPKEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLA 113
               AP  +  EK KR ++  + + PE   K K  + P      + ++RL  EA  + +A
Sbjct: 47  ----APPDAYDEKYKRWVLADLPIVPE---KWKMRVKPKTASQFKAVKRLLGEAQELVIA 99

Query: 114 TDLDREGEAIAWHLRESIGGDDSRYK----RVVFNEITKKAIQEAFS--KPGDLDLNRVN 167
           TD DREGE IA  L E       RY+    R+  + +   +I++A +  KPG    +  +
Sbjct: 100 TDADREGEMIARELVEHC-----RYRGPIQRLWLSALDDASIRKALAALKPGAETFSLYH 154

Query: 168 AQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFVPEE 222
           +   R   D ++G  +S L      +      L  GRVQ+  ++LVV+R+R I  FVP  
Sbjct: 155 SALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVA 214

Query: 223 YWEVHADLASAQ-----QAKVRFEVARENGEAFKPLNEAQANAALEKLKGAKYSVSKRED 277
           YW +  DL   +     Q +   +   + G    P     A  A+     A+  V  R +
Sbjct: 215 YWAIDVDLQHERITFTAQWRAAEDACDDQGRCLDPQLARDAADAMRNAATARL-VKLRTE 273

Query: 278 KPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTNL----S 332
           +     P  PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L     
Sbjct: 274 RMREVAP-LPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQH 332

Query: 333 ADAIGMVRGFIEGEFG-DKYLPEKPNVYSSK---EGAQEAHEAIRPSDVNLRPTQLSGME 388
           ++A  ++      +   ++ +P       S+   +    AH  I P+       QL+G  
Sbjct: 333 SEAPKILAALARADAAVNELMPHIETQRRSRAWNDAKVSAHHGIIPTGAGKDVGQLTGKH 392

Query: 389 RDAERLYELIWRQFVACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTKVMPQQ--- 445
           R    +Y LI  +++A  +P  +Y  T          LRA G+++   G+ + +P+    
Sbjct: 393 R---AVYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAP 449

Query: 446 ---SKAGEDDVLPEMNKGDDMKLLKLDPSQHFTKPPARYSEASLVKEM------------ 490
               +A     LP + +G D  + K++    +T+PP  ++E  L+K M            
Sbjct: 450 AKGREAPAPQALPALVQGQDYAVAKVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLL 509

Query: 491 -----EKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVTERLSESFNNLMDYG 545
                +  GIG  +T A II  + DRGY+  + +   +      + + +  +   + D G
Sbjct: 510 KQKLKDTTGIGTEATRAGIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRA---IADPG 566

Query: 546 FTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAEASENGMR 590
            TA  E+ LD V  GE      L+EF       +    A  NGMR
Sbjct: 567 TTAIWEQALDMVQSGEMS----LEEFVAKQAAWMSKQVARCNGMR 607