Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

 Score = 1568 bits (4060), Expect = 0.0
 Identities = 774/870 (88%), Positives = 824/870 (94%), Gaps = 4/870 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSAN--KEPV-KRGKAAAAE 57
           MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSA+  KEP  KRGKAA  E
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAG-E 59

Query: 58  APVLSPKEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLD 117
           AP LSPKEKA+RQL+ RMGVDP+HGWKAKYEILPGKEKVIEELRRLAK+ADTIYLATDLD
Sbjct: 60  APALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD 119

Query: 118 REGEAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDR 177
           REGEAIAWHLRE+IGGDD+RYKRVVFNEITKKAIQEAFS+PG+LD++RVNAQQARRFLDR
Sbjct: 120 REGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR 179

Query: 178 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLASAQQAK 237
           VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAF+PEEYWE+HADL +A+ AK
Sbjct: 180 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAK 239

Query: 238 VRFEVARENGEAFKPLNEAQANAALEKLKGAKYSVSKREDKPTSSKPSAPFITSTLQQAA 297
           VRFEVARE GEAFKPLNEAQA AALEKLK + YSV KRED+PTSSKPSAPFITSTLQQAA
Sbjct: 240 VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAA 299

Query: 298 SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEGEFGDKYLPEKPN 357
           SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADA+ M R +IE EFG +YLPE P 
Sbjct: 300 SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPL 359

Query: 358 VYSSKEGAQEAHEAIRPSDVNLRPTQLSGMERDAERLYELIWRQFVACQMPPAQYLSTSV 417
           VY SKEGAQEAHEAIRPSDVN  PT+LSGMERDAERLYELIWRQF+ACQMPPAQYLSTSV
Sbjct: 360 VYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSV 419

Query: 418 TVAAGDFELRAKGRILKFDGYTKVMPQQSKAGEDDVLPEMNKGDDMKLLKLDPSQHFTKP 477
           TVAAGDFELRAKGRILKFDGYT+V+PQQSK GEDDVLPEM +G+ +KL+++DPSQHFTKP
Sbjct: 420 TVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKP 479

Query: 478 PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVTERLSES 537
           PAR++EASLVKEMEKRGIGRPSTYAAIISTIQDRGYV+LHNRRFYSEKMGDIVTERLSES
Sbjct: 480 PARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES 539

Query: 538 FNNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAEASENGMRANQPTLT 597
           F+NLMDYGFTA MEE+LDDVAQGERDWK+VLDEFYGDF KKL+ AE+SE+GMRANQPT+T
Sbjct: 540 FSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMT 599

Query: 598 DIPCKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLVPGDEIAADDEGESESRVL 657
           +IPCK CGRPMMIRTASTGVFLGCSGYSLPPKERCK+TVNLVPGDEIAADDEGESESRVL
Sbjct: 600 NIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL 659

Query: 658 LGKHRCPICSTAMDAYLLDETQKLHICGNNPDCSGYEIEKGQYRIKGYEGPSLECDKCGS 717
           LGKHRCPIC+TAMDAYLLDE  KLHICGNNPDC GYEIE+G YRIKGYEGPSLECDKCGS
Sbjct: 660 LGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKCGS 719

Query: 718 EMQLKTGRFGKFFGCTNAECKNTRKLLKNGEAAPPKMDAVKMPELKCEKVDDTYVLRDGA 777
           EMQLKTGRFGKFFGCTN  CKNTRKLLK+GEAAPPKMD V MPELKCEKVDDTYVLRDGA
Sbjct: 720 EMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGA 779

Query: 778 SGLFLAASQFPKNRETRAPLVRELIPHKDEIDPKYHFLLDAPQKDPEGRFAVIRFSRKTK 837
           SGLFLAASQFPKNRETRAPLV E++PHK EIDPKYHFL DAPQKDP+GR AVIR+SRKTK
Sbjct: 780 SGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRKTK 839

Query: 838 EQYVQTEVDGKPTGWKAFYDGGKWKVEDKR 867
           EQYVQ+EVDGKPTGWKAFYDG  WKVEDKR
Sbjct: 840 EQYVQSEVDGKPTGWKAFYDGNAWKVEDKR 869