Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 815 a.a., DNA topoisomerase I from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  458 bits (1179), Expect = e-133
 Identities = 273/636 (42%), Positives = 375/636 (58%), Gaps = 94/636 (14%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPV 60
           M K+LVIVESPAKAKTI  YLG  +VVKSS GH+RDLP   +A                 
Sbjct: 1   MIKNLVIVESPAKAKTIEGYLGKDFVVKSSFGHVRDLPKGNNA----------------- 43

Query: 61  LSPKEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREG 120
                           +D EHG+K  Y +   K++V+ +LR+LAKEA+ ++LA+D DREG
Sbjct: 44  ----------------IDVEHGFKPTYVVSSDKKEVVAQLRKLAKEAEMVWLASDDDREG 87

Query: 121 EAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDRVVG 180
           EAI+WHL E++  +D++ +R+VF EITK AI  A S P  +D++ VNAQQARR LDR+VG
Sbjct: 88  EAISWHLTEALDLNDAKTRRIVFREITKNAILNAISTPRGIDMDLVNAQQARRILDRLVG 147

Query: 181 YMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLASAQQAKVRF 240
           + +SP+LW KI  GLSAGRVQSVAV+LVVEREREI  F  E  + V A           F
Sbjct: 148 FELSPVLWKKIKTGLSAGRVQSVAVRLVVEREREIERFKAEATFRVTAS----------F 197

Query: 241 EVARENGEAFKP---LNEAQANAALEKLKGAKYSVSKREDKPTSSKPSAPFITSTLQQAA 297
           +V     EA  P     E +A A L+   GA+Y +   E KP    P+ PF TSTLQQ A
Sbjct: 198 DVQGRTLEAELPHKFKTEEEAQAFLQACVGAEYKIENLEKKPLKRSPAPPFTTSTLQQEA 257

Query: 298 SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEGEFGDKYLPEKPN 357
           S +L F V +TM +AQRLYE+G I+YMRTDS NLS +AI      I   FG+ ++  +  
Sbjct: 258 SRKLYFSVAQTMTVAQRLYESGKISYMRTDSVNLSDEAIQGATREITSSFGENFVKTR-R 316

Query: 358 VYSSKEGAQEAHEAIRPSDVNLRPTQLSGMERDAERLYELIWRQFVACQMPPAQYLSTSV 417
             +    AQEAHEAIRP+D +     ++  +R+ +RLYELIW++ +A QM  A+   T+V
Sbjct: 317 FKTKSASAQEAHEAIRPTDFS---QMVASSDRNEQRLYELIWKRAIASQMADAEIEKTTV 373

Query: 418 TVAAG---DFELRAKGRILKFDGYTKV----MPQQSKAGEDDV---LPEMNKGDDMKLLK 467
           T+      D +L+A G ++KF+G+ KV       +    +DDV   LP ++ G  + L +
Sbjct: 374 TIGISTQPDQKLQATGEVIKFEGFLKVYIESKDDEEDGADDDVKGMLPPLSIGQGISLRQ 433

Query: 468 LDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNR-------- 519
           +  +Q FT+P ARY+EASLVK++E+ GIGRPSTYA  ISTIQ RGYV    R        
Sbjct: 434 MLATQRFTRPAARYTEASLVKKLEEMGIGRPSTYAPTISTIQKRGYVEKDTREGKERNYQ 493

Query: 520 -----------------------RFYSEKMGDIVTERLSESFNNLMDYGFTAGMEEHLDD 556
                                  + +      +V + L E F N++DY FTA +E   D+
Sbjct: 494 VLTLKGSDITTQTKTEITGAEKAKLFPTDTAMVVNDFLVEHFPNVIDYSFTARVEAEFDE 553

Query: 557 VAQGERDWKHVLDEFYGDFRKKLEVAEASENGMRAN 592
           +AQG+++W+++LD+FY  F K++   E+SEN  RA+
Sbjct: 554 IAQGQKEWENMLDQFYQKFHKRI---ESSENISRAD 586