Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 865 a.a., type I DNA topoisomerase from Serratia liquefaciens MT49

 Score = 1181 bits (3055), Expect = 0.0
 Identities = 587/870 (67%), Positives = 693/870 (79%), Gaps = 8/870 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPV 60
           MGK+LVIVESPAKAKTINKYLGN YVVKSS+GHIRDLPTSGSA+K+     +  A +   
Sbjct: 1   MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSADSTENKAKK--- 57

Query: 61  LSPKEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREG 120
              K+  K  L+ RMGVDP HGW+A+YEILPGKEKV+ EL+ LA+ AD IYLATDLDREG
Sbjct: 58  -KVKKDEKTALVNRMGVDPYHGWEAQYEILPGKEKVVAELKSLAENADHIYLATDLDREG 116

Query: 121 EAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDRVVG 180
           EAIAWHLRE IGGDD R+ RVVFNEITK AIQ AF +PG+L+++RVNAQQARRF+DRVVG
Sbjct: 117 EAIAWHLREVIGGDDKRFSRVVFNEITKNAIQNAFKQPGELNIDRVNAQQARRFMDRVVG 176

Query: 181 YMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLASAQQAKVRF 240
           YMVSPLLW KIARGLSAGRVQSVAV+LVVERER+I+AFVPEEYWE+HADL +     ++ 
Sbjct: 177 YMVSPLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEYWELHADLLAKGDTALQM 236

Query: 241 EVARENGEAFKPLNEAQANAALEKLKGAKYSVSKREDKPTSSKPSAPFITSTLQQAASNR 300
           EV   + + FKP+N  Q +AAL+ L+ A+Y+V  REDKPTSSKP AP+ITSTLQQAAS R
Sbjct: 237 EVTHTHDKPFKPVNREQTHAALKLLEKARYTVLDREDKPTSSKPGAPYITSTLQQAASTR 296

Query: 301 LGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEGEFGDKYLPEKPNVYS 360
           L FGVKKTMMMAQRLYEAG+ITYMRTDSTNLS DA+ MVRG+I   FGDKYLP+ PN YS
Sbjct: 297 LSFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQDALNMVRGYIGENFGDKYLPKAPNQYS 356

Query: 361 SKEGAQEAHEAIRPSDVNLRPTQLSGMERDAERLYELIWRQFVACQMPPAQYLSTSVTVA 420
           SKE +QEAHEAIRPSDVN+   QL  ME DA++LY+LIWRQFVACQM PAQY ST+++V 
Sbjct: 357 SKENSQEAHEAIRPSDVNVLAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLSVK 416

Query: 421 AGDFELRAKGRILKFDGYTKVMPQQSKAGEDDVLPEMNKGDDMKLLKLDPSQHFTKPPAR 480
           A D+ LRAKGR L+FDG+TKVMP   K  ED  LP +  G +++L KL PSQHFTKPPAR
Sbjct: 417 AADYLLRAKGRTLRFDGWTKVMPALRKGDEDRTLPYVEVGSELELQKLIPSQHFTKPPAR 476

Query: 481 YSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVTERLSESFNN 540
           YSEASLVKE+EKRGIGRPSTYA+IISTIQDRGYV + +RRFY+EKMG+IVT+RL E+F  
Sbjct: 477 YSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVESRRFYAEKMGEIVTDRLEENFRE 536

Query: 541 LMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAE--ASENGMRANQPTLTD 598
           LM+Y FTA ME+ LD VA    +WK VLDEF+ +F ++LE AE    E GMR NQ  +T 
Sbjct: 537 LMNYDFTARMEDGLDQVANNHAEWKAVLDEFFAEFSEQLETAEKDPEEGGMRPNQMVMTS 596

Query: 599 IPCKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLVPGDEIAADDEG-ESESRVL 657
           I C  CGR M IRTASTGVFLGCSGY+L PKERCK+T+NLVP  E+    EG ++E+  L
Sbjct: 597 IDCPTCGRKMGIRTASTGVFLGCSGYALTPKERCKTTINLVPETEVLNVLEGDDAETNAL 656

Query: 658 LGKHRCPICSTAMDAYLLDETQKLHICGNNPDCSGYEIEKGQYRIKGYEGPSLECDKCGS 717
             + RC  C TAMD+YL+D  +KLH+CGNNP C GYEIE+G++R+KGY+GP +ECDKCGS
Sbjct: 657 RARRRCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRLKGYDGPVVECDKCGS 716

Query: 718 EMQLKTGRFGKFFGCTNAECKNTRKLLKNGEAAPPKMDAVKMPELKCEKVDDTYVLRDGA 777
           EM LK GRFGK+ GCTN  CKNTRK+L+NG+ APPK D V +PEL CEK D  +VLRDGA
Sbjct: 717 EMHLKMGRFGKYMGCTNENCKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGA 776

Query: 778 SGLFLAASQFPKNRETRAPLVRELIPHKDEIDPKYHFLLDAPQKDPEGRFAVIRFSRKTK 837
           +G+FLAA+ FPK+RETRAPLV EL   KD +  K  +L DAP  D EG   ++RFSRKTK
Sbjct: 777 AGVFLAANTFPKSRETRAPLVEELARFKDRLPEKLRYLADAPVTDAEGNKTMVRFSRKTK 836

Query: 838 EQYVQTEVDGKPTGWKAFYDGGKWKVEDKR 867
           +QYV +E DGK TGW AFY  GKW VE K+
Sbjct: 837 QQYVSSEKDGKATGWSAFYIDGKW-VEGKK 865