Pairwise Alignments

Query, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score =  444 bits (1141), Expect = e-128
 Identities = 274/697 (39%), Positives = 387/697 (55%), Gaps = 82/697 (11%)

Query: 4   SLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPVLSP 63
           ++V+VESPAKAKTINKYLG+ Y V +S GH+RDLP                A +  VL  
Sbjct: 2   NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLP----------------AKDGSVL-- 43

Query: 64  KEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLDREGEAI 123
                          P+  ++  +E+     K ++++    K +D ++LATD DREGEAI
Sbjct: 44  ---------------PDQDFEMSWEVDSASAKRMKDIADAVKSSDGLFLATDPDREGEAI 88

Query: 124 AWHLRESIGGD----DSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDRVV 179
           +WH+ + +       D   KRVVFN ITKKA+ +A + P D+D+  V+A  ARR LD +V
Sbjct: 89  SWHVLDLLKKKRVLGDKPVKRVVFNAITKKAVLDAMANPRDIDVPLVDAYLARRALDYLV 148

Query: 180 GYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLASAQQAKVR 239
           G+ +SP+LW K+    SAGRVQSVA++LV +RE EI  FV EEYW + A L + +  +  
Sbjct: 149 GFNLSPVLWRKLPGARSAGRVQSVALRLVCDRESEIERFVSEEYWNISALLKTPRGDEFE 208

Query: 240 FEVARENGEAFKPLN---EAQANAALEKLKGAKYSVSKREDKPTSSKPSAPFITSTLQQA 296
            ++   +G+  +         AN     L+GA Y V   E KP    P  PF TSTLQQA
Sbjct: 209 AKLVSADGKRLQSRGIKTGEDANRLKALLEGATYVVDTVEAKPVKRNPGPPFTTSTLQQA 268

Query: 297 ASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADAIGMVRGFIEGEFG 348
           AS+R+GFG  +TM +AQ+LYE         G ITYMRTD   ++ +AI   R  I  +FG
Sbjct: 269 ASSRMGFGASRTMQVAQKLYEGIDIGGETVGLITYMRTDGVQIAPEAIDAARLAIGEQFG 328

Query: 349 DKYLPEKPNVYSSK-EGAQEAHEAIRPSDVNLRPTQLSG-MERDAERLYELIWRQFVACQ 406
           ++Y+PEK   YS+K + AQEAHEAIRP+D    P Q+   ++ D  RLY+LIW++ +A Q
Sbjct: 329 ERYVPEKARFYSTKAKNAQEAHEAIRPTDFTRTPDQVKRYLDADQLRLYDLIWKRGIASQ 388

Query: 407 MPPAQYLSTSVTVAAGD----FELRAKGRILKFDGYTKVMPQQSKAGE-----DDV--LP 455
           M  A+   T+V + A        LRA G +++FDG+      Q + GE     DD   LP
Sbjct: 389 MASAEIERTTVEILADKNGEKAGLRAVGSVIRFDGFIAAYTDQKEDGEQSDDGDDEGRLP 448

Query: 456 EMNKGDDMKLLKLDPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVS 515
           ++N  +++   K++ SQHFT+PP RYSEASL+K+ME+ GIGRPSTYAA + T+ DR Y+ 
Sbjct: 449 QINARENLAKQKINASQHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDREYIV 508

Query: 516 LHNRRFYSEKMGDIVTERLSESFNNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDF 575
           +  R+      G +VT  L   F   ++Y FTA +EE LD ++ GE DWK VL +F+ DF
Sbjct: 509 IDKRKLIPHSRGRLVTAFLESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDFWKDF 568

Query: 576 RKKLEVAEASE--NGMRANQPTLTDIP------------CKVCGR-PMMIRTASTGVFLG 620
             ++E  +     N + A    L  +             C+VCG   + ++    G F+G
Sbjct: 569 FAQIEDTKELRVTNVLDALNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYGAFVG 628

Query: 621 CSGYSLPPKERCKSTVNLVPGDEIAADDEGESESRVL 657
           CS Y       C  T  L   D   AD    +E + L
Sbjct: 629 CSNY-----PECNYTRQLT-SDGAEADAAASNEPKAL 659



 Score = 39.7 bits (91), Expect = 8e-07
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 712 CDKCGS-EMQLKTGRFGKFFGCTN-AECKNTRKLLKNGEAAPPKMDAVKMPELKCEKVD- 768
           C  CG+  + LK G++G F GC+N  EC  TR+L  +G  A    DA    E K    D 
Sbjct: 608 CQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAEA----DAAASNEPKALGADP 663

Query: 769 ---DTYVLRDGASGLFLAASQFPKNRETRAP 796
              +   LR G  G ++      + + +  P
Sbjct: 664 MTGEELTLRSGRFGPYIQRGDGKEAKRSSLP 694