Pairwise Alignments

Query, 474 a.a., cytochrome c oxidase, cbb3-type, subunit I from Pseudomonas stutzeri RCH2

Subject, 542 a.a., Cytochrome c oxidase subunit 1 from Alteromonas macleodii MIT1002

 Score = 74.3 bits (181), Expect = 9e-18
 Identities = 61/261 (23%), Positives = 118/261 (45%), Gaps = 22/261 (8%)

Query: 157 IYVGNWFFGAFILTVAILHIVNNLEIPVTAMK----SYSVYAGATDAM----VQWWYGHN 208
           ++V  W   AF+L +A++ ++      V   K    S+   AG  D +    + W++GH 
Sbjct: 212 LFVWTWLITAFLL-IAVMPVLAGAVTMVLTDKFFGTSFFDAAGGGDPVMFQHIFWFFGHP 270

Query: 209 AVGFFLTAGFLGIMYYFVPKQAERPVYSYRLSIVHFWA---LITVYIWAGPHHLHYTALP 265
            V   +   F GI+   VP  + + ++ Y  S+V+  A   L++  +WA  HH+  T +P
Sbjct: 271 EVYIMILPAF-GIISQIVPTFSRKQLFGYA-SMVYATASIALLSFVVWA--HHMFTTGMP 326

Query: 266 DWAQSLGMVMSLILLAPSWGGMINGMMTLSGAWH-KLRSDPILRFLVVSLAFYGMSTFEG 324
            + +   M  ++++  P+   + N + T+   W   L  +  + F +  +  + +    G
Sbjct: 327 VYMEMFFMFATMLISVPTGVKVFNWVATM---WRGSLSFEMPMMFAIAFIVLFTIGGLSG 383

Query: 325 PMMAIKTVNALSHYTDWTIGHVHAGALGWVAMVSIGALYHLIPKVFGRAQMHSVALINTH 384
            M+AI  V+   H T + + H H   +       + A+Y+ +PK  G+  M+   L   H
Sbjct: 384 LMLAITPVDFQYHDTYFVVAHFHYVLVTGAVFSIMAAVYYWLPKWTGK--MYDTTLAKWH 441

Query: 385 FWLATIGTVLYIASMWVNGIA 405
           FW + +   +    M   G+A
Sbjct: 442 FWCSLVSVNVLFFPMHFVGLA 462



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 16/73 (21%), Positives = 27/73 (36%)

Query: 338 YTDWTIGHVHAGALGWVAMVSIGALYHLIPKVFGRAQMHSVALINTHFWLATIGTVLYIA 397
           +   T  H      G V     G    LIP + G   M    + N  FW+     ++ ++
Sbjct: 85  FNQMTTVHGLIMVFGAVMPAFTGLANWLIPMMIGAPDMALPRMNNWSFWILPGAFLILLS 144

Query: 398 SMWVNGIAQGLMW 410
           S+++ G      W
Sbjct: 145 SLFMEGGGPAFGW 157