Pairwise Alignments

Query, 821 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 795 a.a., PAS domain S-box protein from Paraburkholderia sabiae LMG 24235

 Score =  328 bits (842), Expect = 6e-94
 Identities = 186/458 (40%), Positives = 274/458 (59%), Gaps = 32/458 (6%)

Query: 363 YRVRRADGRYYWIEANGRVDHAPAGTALSFPGVLIDVEDRRSIEAERDRATAALRALNET 422
           +RVR+ DG  +W            G  + F  +  DV +R++ + + ++A  AL      
Sbjct: 217 WRVRK-DGTRFWANVIIDAIRDETGELIGFAKITRDVTERKTAQEQLEKARVALL----- 270

Query: 423 LEQRVAERTAELIQAEEKLRQSQKMEAVGQLTGGLAHDFNNLLAGISGALELMSMRIAQG 482
                               QSQKMEA+G+LTGG+AHDFNN+L  + G LEL+  R   G
Sbjct: 271 --------------------QSQKMEALGKLTGGVAHDFNNVLQVLRGNLELLEGR--HG 308

Query: 483 RLNDIDKYMLSAQSAAKRAAALTHRLLAFSRRQTLDPRPVDVNLLVEGMTELIQRTVGPS 542
           R     + +  A  A +  A L  +LLAF RRQ L P  V++ +++  M +L++R +G  
Sbjct: 309 RDAWTQERLYKAIEAVEHGATLASQLLAFGRRQALQPVVVNLAVMLRSMDDLLRRALGEV 368

Query: 543 IRLETISAPDLWPASVDTSQLENAILNLCINSRDAMPDGGRITIETANQWLDSD-AAQAN 601
           I +ET+ A  LW   VD + LEN +LNL IN+RDAMP+GG++T+E +N  LD    A A+
Sbjct: 369 INVETVIAGGLWNTLVDPNHLENVVLNLAINARDAMPEGGKLTLELSNAMLDEHYTALAD 428

Query: 602 DLPAGEYLSLTVTDTGTGMTPGVIAKAFDPFFTTKPIGEGTGLGLSMIYGFAKQSGGQVR 661
           D+  G+Y+ L VTDTGTGM+  ++ +AF+PFFTTKP G+GTGLGLSM YGF KQSGG VR
Sbjct: 429 DVRDGQYVLLAVTDTGTGMSREIMERAFEPFFTTKPEGQGTGLGLSMAYGFIKQSGGHVR 488

Query: 662 ISSEVGRGTAMCIYLPRHLGETGIGAVVPAQTAAALTGSCGTILIVDDEPTVRMLLMDVL 721
           I SE G GT + +YLPR + E      +      AL G   TIL+V+D+  V++ +++ L
Sbjct: 489 IYSEPGHGTTVKVYLPRSMAE---AVDLEPPEPVALAGGAETILVVEDDRRVQVTVLETL 545

Query: 722 GDLGYTLIEASDSVAGLKLLQSDVSIDLLITDVGLPGGMNGRQMADAGREVRQELKTLFI 781
             LGYT+++A D+ + L ++QS ++IDLL TDV +PG M   ++A     +   LK LF 
Sbjct: 546 RQLGYTVLKADDAQSALAIVQSGMNIDLLFTDVVMPGTMRSTELAKRATLMLPHLKVLFT 605

Query: 782 TGYAESAALGNSSLGVGMQVLTKPFSIDALAARVLELL 819
           +GY ++A +    L  G+ +L+KP+S + LA+++  LL
Sbjct: 606 SGYTQNAIVHGGRLDPGVHLLSKPYSREQLASKIRRLL 643



 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 36/117 (30%), Positives = 68/117 (58%), Gaps = 13/117 (11%)

Query: 703 TILIVDDEPTVRMLLMDVLGDLGYTLIEASDSVAGLKLLQSDVSIDLLITDVGLPGGMNG 762
           T+L+VDD+   R  + ++L  +GY + EA+D+ A +++L ++  +D+L+TD+ LP G +G
Sbjct: 675 TVLVVDDDNGSREAVNELLTTMGYDVHEAADAEAAMRVLMAE-KVDVLLTDITLP-GQSG 732

Query: 763 RQMADAGREVRQELKTLFITGYAESAALGNS----SLGVGMQVLTKPFSIDALAARV 815
            ++A        +++ +F++G       GN+     +G G   L KPF+ D L A +
Sbjct: 733 IELARVAVGRNPDIRVIFVSG-------GNTPTPEEVGFGCASLGKPFTGDQLHALI 782