Pairwise Alignments

Query, 821 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 814 a.a., PAS domain S-box protein from Paraburkholderia sabiae LMG 24235

 Score =  301 bits (772), Expect = 7e-86
 Identities = 189/481 (39%), Positives = 267/481 (55%), Gaps = 45/481 (9%)

Query: 351 DVIARGGAY-AHQYRVRRADGRYYWIEANGRVDHAPAGTALSFPGVLIDVEDRRSIEAER 409
           +  AR G + A  +RVRR DG  +W           +GT + F  +  D+ +RR      
Sbjct: 239 ETAAREGRWEAEGWRVRR-DGSRFWAHVVIDAIRDESGTLIGFAKITRDITERR------ 291

Query: 410 DRATAALRALNETLEQRVAERTAELI-QAEEKLRQSQKMEAVGQLTGGLAHDFNNLLAGI 468
                               + AEL+ Q    L QSQKMEA+G+LTGG+AHDFNN+L  +
Sbjct: 292 --------------------QAAELLDQTRNALFQSQKMEALGKLTGGVAHDFNNVLQVL 331

Query: 469 SGALELMSMRI----AQGRLNDIDKYMLSAQSAAKRAAALTHRLLAFSRRQTLDPRPVDV 524
            G LEL+  R     ++ R+         A  A +R + L  +LLAF RRQ L P P  +
Sbjct: 332 RGNLELLGARHDDAWSRSRIG-------RAIEAVERGSKLASQLLAFGRRQALQPVPSSL 384

Query: 525 NLLVEGMTELIQRTVGPSIRLETISAP--DLWPASVDTSQLENAILNLCINSRDAMPDGG 582
             ++  M +L++R +G  +R+    A   +LW   VDT QLEN +LNL INSRDAMP+GG
Sbjct: 385 GDVLHNMEDLLRRALGERVRVRIHEARGGELWNVLVDTHQLENVLLNLAINSRDAMPEGG 444

Query: 583 RITIETANQWLDSDAAQANDLPAGEYLSLTVTDTGTGMTPGVIAKAFDPFFTTKPIGEGT 642
            +T   +N  LD+  A    +  GEY+ +TVTDTGTGM+  V  +AFDPFFTTKP G+GT
Sbjct: 445 MLTFGLSNAVLDAQTAVTAQIDPGEYVKMTVTDTGTGMSADVAERAFDPFFTTKPEGQGT 504

Query: 643 GLGLSMIYGFAKQSGGQVRISSEVGRGTAMCIYLPRHLGETGIGAVVPA--QTAAALTGS 700
           GLGLSM YGF  QSGG + ++S  G GT + IYLPR        A  PA  QT   L G 
Sbjct: 505 GLGLSMAYGFVLQSGGHIELASTPGVGTTVTIYLPRSTDTPVARAASPAEPQTGDDLRGD 564

Query: 701 CGTILIVDDEPTVRMLLMDVLGDLGYTLIEASDSVAGLKLLQSDVSIDLLITDVGLPGGM 760
             T+L+V+D+  V++ ++D+L  LGY ++ A+D+   L +L+S   +DLL +DV +PG +
Sbjct: 565 -ETVLVVEDDRRVQLTVVDLLSQLGYGVLTANDATEALTVLRSGAKVDLLFSDVVMPGPL 623

Query: 761 NGRQMADAGREVRQELKTLFITGYAESAALGNSSLGVGMQVLTKPFSIDALAARVLELLR 820
              +MA     +R  LK LF +G+       ++ L  G  +L KP+S   LA ++ E+  
Sbjct: 624 LSPEMARQALLMRPSLKVLFTSGHTRDTMGLDAQLRRGADLLQKPYSRMQLARKIREVFD 683

Query: 821 G 821
           G
Sbjct: 684 G 684



 Score = 50.8 bits (120), Expect = 3e-10
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 704 ILIVDDEPTVRMLLMDVLGDLGYTLIEASDSVAGLKLLQSDVSIDLLITDVGLPGGMNGR 763
           ILIV+D+   R  L ++L  LG+T     ++   L+ LQ     D+L+TD+ LP GM+G 
Sbjct: 703 ILIVEDDRDARDALCELLAMLGHTFEAVGNAEEALQRLQLH-PFDVLLTDLTLP-GMSGF 760

Query: 764 QMADAGREVRQELKTLFITGYAESAALGNSSLGVGMQVLTKPFSIDALAA 813
            +A A   +R   + +F +G    A   +++L      L KP+S+D L A
Sbjct: 761 DLARAAIALRAAQRVVFSSGL--DAQTSDTTLPFEWTALRKPYSLDQLKA 808



 Score = 26.6 bits (57), Expect = 0.006
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 338 HPEDREGLIAAIDDVIARGGAYAHQYRVRRADGRYYWIEANGRVDHAPAGTALSFPGVLI 397
           HPE      AA+      G      +RVR+ DG  +W        ++P G  L +  V  
Sbjct: 105 HPE------AALQRAHESGRDETEGWRVRK-DGTLFWANVIVTALYSPGGELLGYGRVER 157

Query: 398 DVEDRRS 404
           D+ D+++
Sbjct: 158 DISDKKN 164