Pairwise Alignments

Query, 821 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1633 a.a., response regulator from Paraburkholderia sabiae LMG 24235

 Score =  319 bits (818), Expect = 7e-91
 Identities = 191/494 (38%), Positives = 287/494 (58%), Gaps = 35/494 (7%)

Query: 328  LKLEQIIATVHPEDREGLIAAIDDVIARGGAYAHQYRVRRADGRYYWIEANGRVDHAPAG 387
            L L+   + +H +D   + A + ++   G     + R+R  DG + WI          A 
Sbjct: 1022 LALQSYFSLIHADDLPLVKAHLGELRRTGAPMRFENRIRHIDGSWRWI----------AW 1071

Query: 388  TALSFPGVLIDVEDRRSIEAERDRATAALRALNETLEQRVAERTAELIQAEEKLRQSQKM 447
            T               S++ + +R     R +    E + A R      AEE LR +QKM
Sbjct: 1072 TL--------------SLDPDTERIHGVGRDVTSDRETQEALR-----HAEEALRVAQKM 1112

Query: 448  EAVGQLTGGLAHDFNNLLAGISGALELMSMRIAQGRLNDIDKYMLSAQSAAKRAAALTHR 507
            EA+G+LTGG+AHDFNNLL  + G L+L++  +A G      + + +A +   R A L  +
Sbjct: 1113 EAIGKLTGGVAHDFNNLLQVVGGNLQLLADDVA-GNERPAQR-VRNALAGVARGAKLASQ 1170

Query: 508  LLAFSRRQTLDPRPVDVNLLVEGMTELIQRTVGPSIRLETISAPDLWPASVDTSQLENAI 567
            LLAF RRQ L P+ V++   V G+ ++++R +G  I +ETI +  LW   VD  Q+ENA+
Sbjct: 1171 LLAFGRRQPLAPKVVNLGRFVRGLDDMMRRALGDGIEIETIVSGGLWNTLVDPFQVENAL 1230

Query: 568  LNLCINSRDAMPDGGRITIETANQWLDSDAAQAN-DLPAGEYLSLTVTDTGTGMTPGVIA 626
            LNL IN+RDAM   G++TIE  N  LD   A+ + D+  G+Y+ + VTDTG+GM+  V  
Sbjct: 1231 LNLAINARDAMDGHGKLTIEAGNASLDDAYAKRHADVIPGQYVMVAVTDTGSGMSADVQE 1290

Query: 627  KAFDPFFTTKPIGEGTGLGLSMIYGFAKQSGGQVRISSEVGRGTAMCIYLPRHLGETGIG 686
              F+PFFTTKP G+GTGLGLSM+YGF KQSGG V+I SE G GT + +YLPR   E  + 
Sbjct: 1291 HVFEPFFTTKPEGQGTGLGLSMVYGFVKQSGGHVKIYSEPGHGTTIRLYLPRVREEEDLE 1350

Query: 687  AVVPAQTAAALTGSCGTILIVDDEPTVRMLLMDVLGDLGYTLIEASDSVAGLKLLQSDVS 746
             +V A  A    G   TIL+V+D+  VR  ++++L  LGY +++A D+ + L +++S V 
Sbjct: 1351 TIVDAGPA---KGGAETILVVEDDEDVRTTVVEMLSALGYRVLKAKDAQSALAIVESGVP 1407

Query: 747  IDLLITDVGLPGGMNGRQMADAGREVRQELKTLFITGYAESAALGNSSLGVGMQVLTKPF 806
            IDLL TDV +PG +   ++A   RE +  +  LF +GY ++A +    L  G+++L+KP+
Sbjct: 1408 IDLLFTDVVMPGPLRSTELARKARERQPGIAVLFTSGYTDNAIVHAGRLDEGVELLSKPY 1467

Query: 807  SIDALAARVLELLR 820
            S +ALA ++   LR
Sbjct: 1468 SREALARKIQHALR 1481



 Score = 76.3 bits (186), Expect = 1e-17
 Identities = 99/433 (22%), Positives = 173/433 (39%), Gaps = 74/433 (17%)

Query: 438 EEKLRQSQKMEAVGQLT----GGLAHDFNNLLAGISGALELMSMRIAQGRLNDIDKYMLS 493
           EE+ R+++ +  + +        ++H+F   L  + G LE M  R       D     ++
Sbjct: 346 EEERRRAEALAEIDRAKTTFFSNISHEFRTPLTLMLGPLEEMLARPDAANPGDRQLIEVT 405

Query: 494 AQSAAKRAAALTHRLLAFSR----RQTLDPRPVDVNLLVEGMTELIQRTV-GPSIRLETI 548
            ++   R   L + LL FSR    R  + P+P D+      +  L +  +    ++LE  
Sbjct: 406 HRNGL-RLLKLVNALLDFSRIEAGRIEIHPQPTDLAAFTADLASLFRSAIESAGMKLEVD 464

Query: 549 SAPDLWPASVDTSQLENAILNLCINSRDAMPDGGRITIETANQWLDSDAAQANDLPAGEY 608
             P     S+D    E  +LNL  N+      G   TI  + +  D  A           
Sbjct: 465 CEPLPHLVSIDREMWEKVVLNLLSNAFKFTLTG---TIAVSLKMADDGA----------- 510

Query: 609 LSLTVTDTGTGMTPGVIAKAFDPFFTTK-PIG---EGTGLGLSMIYGFAKQSGGQVRISS 664
           + ++V D+G G+    + + F+ F   +  +G   EG+G+GL+++    +   G + + S
Sbjct: 511 IEMSVADSGIGIPEHEVPRLFERFHRVEGAMGRSVEGSGIGLALVNELVRLQDGSIHVES 570

Query: 665 EVGRGTAMCIYLP-----------------------------RHLGETGIGAVVPAQTAA 695
           E+G GT   I LP                             R L +  + A   A  A+
Sbjct: 571 ELGVGTRFTIVLPPAIVLDPASSDAARATMSANAQSYADAARRWLPDAPMAA--DADDAS 628

Query: 696 ALTG-----------SCGTILIVDDEPTVRMLLMDVLGDLGYTLIEASDSVAGLKLLQSD 744
           AL G           + G +L+VDD   +R  +  +L   G+ +  A+D    L   + +
Sbjct: 629 ALPGAGNAPLALDGEATGKLLVVDDNADLRDYMRRILSAAGHQVHVAADGEEALAAAR-E 687

Query: 745 VSIDLLITDVGLP--GGMNGRQMADAGREVRQELKTLFITGYAESAALGNSSLGVGMQVL 802
           +  +L+++DV +P   G    +   A  ++R+    L      E A +G    G     L
Sbjct: 688 LQPELIVSDVMMPKLDGFGLLRALRADDDLRETPVLLLSARAGEEAKVGGLESGAD-DYL 746

Query: 803 TKPFSIDALAARV 815
            KPF+   L ARV
Sbjct: 747 IKPFAARELLARV 759



 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 8/117 (6%)

Query: 704  ILIVDDEPTVRMLLMDVLGDLGYTLIEASDSVAGLKLLQSDVSIDLLITDVGLPGGMNGR 763
            IL V+D+  VR+   ++L   G  + EA+ +   LKLL  + S D+L+TD+GL  G +G 
Sbjct: 1519 ILFVEDDELVRVSTAELLRTFGIEVAEAASAAQALKLLH-EASFDVLLTDIGL-AGASGV 1576

Query: 764  QMADAGREVRQELKTLFITGYAESAALGNSSLGV-GMQVLTKPFS----IDALAARV 815
             +A         ++ +F+TG +++A      L + G   L KP+     ++AL A V
Sbjct: 1577 DLAIDAIANEPGIRVIFVTG-SDAALSPEQQLQLQGAAQLRKPYDPLDLVNALRACV 1632



 Score = 33.1 bits (74), Expect = 1e-04
 Identities = 17/27 (62%), Positives = 19/27 (70%)

Query: 407 AERDRATAALRALNETLEQRVAERTAE 433
           AER +A  ALR LNETLE RV E  A+
Sbjct: 957 AERTKAEEALRELNETLEGRVIEAVAD 983



 Score = 28.5 bits (62), Expect = 0.003
 Identities = 42/200 (21%), Positives = 76/200 (38%), Gaps = 21/200 (10%)

Query: 119  RTVQGRAVRMIGAMLDLTRVRAAEAALRQ---SEERFSAILETIEAAFAIVQVKFDADD- 174
            R V+G A +   A+ +    +AA+  + +   +EE    + ET+E    +++   D D  
Sbjct: 930  RFVEGIAAQAATAIDNARLYQAAQREIAERTKAEEALRELNETLEGR--VIEAVADRDRL 987

Query: 175  ----------RPVDYQFVEVNPAFERQAGVDLRGKWVTEYAPELEQFWFDTY----GHVA 220
                         D +   V+P++ R  G D+    +  Y   +            G + 
Sbjct: 988  WDVSEDLLVVAGFDGELQRVSPSWTRLLGHDVHWLALQSYFSLIHADDLPLVKAHLGELR 1047

Query: 221  KTGEPANFESFALAFE-RWFDVRAVRVGDPADRRIAILFNDVTQRRDAENRLRISEALAR 279
            +TG P  FE+     +  W  +      DP   RI  +  DVT  R+ +  LR +E   R
Sbjct: 1048 RTGAPMRFENRIRHIDGSWRWIAWTLSLDPDTERIHGVGRDVTSDRETQEALRHAEEALR 1107

Query: 280  ENIQRVQLALAAGAIIGTWN 299
               +   +    G +   +N
Sbjct: 1108 VAQKMEAIGKLTGGVAHDFN 1127