Pairwise Alignments

Query, 296 a.a., ABC-type nitrate/sulfonate/bicarbonate transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 262 a.a., aliphatic sulfonate ABC transporter permease SsuC from Pseudomonas fluorescens SBW25

 Score =  101 bits (251), Expect = 2e-26
 Identities = 67/249 (26%), Positives = 119/249 (47%), Gaps = 11/249 (4%)

Query: 43  ILPFALLLALYLTSSTQRLELNPNDKLLPSFGQMSAAVERLAFTPDKRSGDYLFWQDTAS 102
           +LP  LL    L+ S   L    + ++LP+   + AA   L       SG+   W   A 
Sbjct: 14  VLPVLLLAVWQLSVSAGWL----STRILPAPSAVIAAGVHLV-----ASGE--IWTHLAI 62

Query: 103 SLKRLGIGLAIAAVAGLCLGIAAGTLPLFSAPLSPLLTVLSMVPPLAILPILFIVFGLGE 162
           S  R G+G  I    GL LG   G        L   + ++  VP LA++P++ + FG+ E
Sbjct: 63  SGWRAGLGFVIGGSIGLALGFITGLSTWGERLLDSSVQMIRNVPHLALIPLVILWFGIDE 122

Query: 163 LSKVMLIVIGITPILARDLEQRAREIPRELLIKAQTLGANTWTLILRLVLPQLMPRLLIS 222
            +K+ L+ +G    +  +     R +   L+  +++ G + ++L  +++LP  +P +L+ 
Sbjct: 123 TAKIFLVALGTLFPIYLNTYHGIRNVDPALVEMSRSYGLSGFSLFRQVILPGALPSILVG 182

Query: 223 LRLVLGSAWLFLIAAEAIASTDGLGYRIFLVRRYMAMDVILPYVAWITLLAWAMDFTLRR 282
           +R  LG  WL LI AE I+++ G+GY     R ++  DV++  +    +L    D   R 
Sbjct: 183 VRFALGFMWLTLIVAETISASSGIGYLAMNAREFLQTDVVVLAIVMYAILGKLADLAARG 242

Query: 283 LTQLLFPWY 291
           L ++   W+
Sbjct: 243 LERVWLRWH 251