Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1156 a.a., Sensory box histidine kinase/response regulator from Pseudomonas fluorescens GW456-L13

 Score =  290 bits (743), Expect = 2e-82
 Identities = 179/419 (42%), Positives = 246/419 (58%), Gaps = 17/419 (4%)

Query: 149  GFV---ADVTERKLAQLRLLQLNEELEQRVAERTCELR-------EARDAAEAANLSKDK 198
            GFV    D+T  + A+  L + NE LEQRV ERT EL        EA+  AEAAN SK +
Sbjct: 740  GFVMSFTDITAFREAEQALTEANEGLEQRVTERTHELSQLNVALTEAKGTAEAANQSKTR 799

Query: 199  YLAAASHDLLQPLNAARLLISTLRERQ--LPQSELHLVERAHLALEGAEDLLTDLLDISK 256
            +LAA SHDL+QPLNAARL  + L  ++  L      LV     +L  AEDL++DLLDIS+
Sbjct: 800  FLAAVSHDLMQPLNAARLFSAALSHQEDGLSGEAQKLVGHLDSSLRSAEDLISDLLDISR 859

Query: 257  LDQAAIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLPRCAISCDFRLLTRILRNL 316
            L+   I P+   ++L+++   L +EF+ +A  + L+         +  D +LL RIL+N 
Sbjct: 860  LENGKINPNRQPFALNELFDTLGTEFKVLAREQKLEFRVRTSTLRVDSDIKLLRRILQNF 919

Query: 317  LSNACRYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAERSG 376
            L+NA RY   G VLLG R+  + L +EVWD G GIPE+ L  IF EF +L   +     G
Sbjct: 920  LTNAFRY-GKGPVLLGVRRHKEQLCLEVWDRGPGIPEDKLQVIFEEFKRLDSHQTRAEKG 978

Query: 377  VGLGLAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAATVPPRSAVTPVIAPQLGDPLP 436
            +GLGLAI D +  +L + + VRS PGRGSVFS+ VP+A     ++A    +A   G  L 
Sbjct: 979  LGLGLAIADGLCRVLGHTLRVRSWPGRGSVFSVSVPLARA---QTAAPVKVAEFNGKLLN 1035

Query: 437  GRRLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAALG-GVAPDAILADYHLDHGS 495
            G ++L IDNE SIL  M +LL +WGC V TA + +   A LG G+ P   L DYHLDHG 
Sbjct: 1036 GAQVLCIDNEDSILIGMNSLLSRWGCQVWTARNREECAALLGEGMRPQLALVDYHLDHGE 1095

Query: 496  TGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKPVKPGKMRSVLSHLL 554
            TG D++  LR +    +P V+I+AD   +    +   G+  L KPVKP  +R++LS  +
Sbjct: 1096 TGTDLMAWLRTQMGEPVPGVVISADGRPETVDLVHAAGLDYLAKPVKPAALRALLSRYI 1154